RNA id: TU177584


Basic Information

Item Value
RNA id TU177584
length 321
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G141175
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13560519 ~ 13560839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatcgtcatcatttgtgctgctatatatgtattttaaacggcacagcgtgactgcCTTCATTTATtccttactacagatttgtaactgcaaaccaTACTCTTTGccgtattattaataatgtacttatcagacgtcctcaacccgggcaagttacagttgagaCAAAATCCACACGTTTCACATGAATCATCCggatacaatatagcagctttaattgaactaaagtgcgcgtctcagtcaggGCGTTTTTGGGCGCATTTATTAATCCAGTCCTTATGTTTTacagggaaacccagatctgctgtattaatgtattcat

Function

GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177537 lncRNA downstream 152327 13407287 ~ 13408192 (-) False AMCG00003164
TU177329 lncRNA downstream 729593 12821902 ~ 12830926 (-) True G140971
TU177299 lncRNA downstream 820728 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA downstream 820728 12728274 ~ 12739791 (-) True AMCG00003138
TU177236 lncRNA downstream 954567 12605752 ~ 12605952 (-) True G140906
TU177625 lncRNA upstream 205117 13765956 ~ 13836294 (-) True G141201
TU177647 lncRNA upstream 262575 13823414 ~ 13834549 (-) True G141219
TU177651 lncRNA upstream 282340 13843179 ~ 13843471 (-) True G141221
TU177655 lncRNA upstream 285111 13845950 ~ 13846159 (-) True G141225
TU177695 lncRNA upstream 374445 13935284 ~ 13937709 (-) True G141260
AMCG00003164 mRNA downstream 131637 13407272 ~ 13428882 (-) True AMCG00003164
AMCG00003165 mRNA downstream 155322 13396383 ~ 13405197 (-) True AMCG00003165
AMCG00003161 mRNA downstream 218754 13288224 ~ 13341765 (-) True AMCG00003161
AMCG00003159 mRNA downstream 455122 13047336 ~ 13105397 (-) True AMCG00003159
AMCG00003153 mRNA downstream 547549 13012461 ~ 13012970 (-) True AMCG00003153
AMCG00003173 mRNA upstream 236236 13797075 ~ 13811136 (-) True AMCG00003173
AMCG00003174 mRNA upstream 287671 13848510 ~ 13871340 (-) True AMCG00003174
AMCG00003177 mRNA upstream 381475 13942314 ~ 13951931 (-) True AMCG00003177
AMCG00003180 mRNA upstream 404042 13964881 ~ 13994367 (-) True AMCG00003180
AMCG00003181 mRNA upstream 494062 14054901 ~ 14061129 (-) True AMCG00003181
TU177540 other downstream 130195 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 130195 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 681098 12861426 ~ 12879421 (-) True G141004
TU177331 other downstream 705178 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other downstream 705178 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 1108633 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 1520816 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 3187222 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 5982809 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 5992032 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile