RNA id: TU177625


Basic Information

Item Value
RNA id TU177625
length 1160
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G141201
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13765956 ~ 13836294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TttggatttaaacaaaaagtaTCTTTATTTCACTGTACTGTTTTATAAAATCAACTCGGtctgtattgtaatatttgatGCCAACTTACAGACGTATACGtttgtgcatgagtgtgtgagtgtctgcatgtgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtatctGAGTGCTGTTAAGGCAACATGCAGTCTTTAGTTCCCAATAGCTTCAAAGAAATaacactgtatttgtttttatttttattttttaatacctgTTTCTAGTGACCTAAAGCAGACAATGAGGCTTTTTTAGGTTTGGGCAACAGTGCTAACAGATGTGAgcaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgtgtgcgtgtatgtgtgaaGATGGGAGGAATCGGACATGGAGAGGGGGTGAGGATGGAAGTATAGCCACAGTCCCATCACTCGGTGGCTAAAAATGGGATTCTCTTGAACTGCAGacatttaacatttctaatttctaAAGTCatgatttggtttaatttttgcCCTTGAAACCTTAAAGGCAgtataataaacattattattattattattatcatcatcatcatcatcaaaacctCCTTTATTTAGCACATCCATTTTGTAGGAGAACTCAAAAACATCCTTCTCTCCCCTGTCCAATAGGAAGAGTAGAGACTGCCAGCTTAGAACAGCACATCTCTGAAGTCTAACCATTTGAACAAACTAGAGTTTAAAAAGTGCCAATTTTCCTTATTTTGCCAATGGCTTAGTCACAGTATAAGGTGAAGTCTGATAGGCTTCGGTAGATAGAGTGTGGTCTTGTTTTAACCTCTTGCCAGTGAGACGCAAACTCTCACACAAACCAAAACTCAAATATAGTGCCACCATTAGGTCACTAGTCTATGTAGTCCCATAGTTCTCCATTGTTCACAAAATAACTGGCCCCCTCTAGCCTGGGCTGTATGGAGAATTGGGAAGGACCCTGTTAATGGAGCCTGCTTCCTAACCACAGCTAAGGGACTGTGTGAGGCTAGGAGGGGAGGACAGTGATATAAACCAAGGATGGAAGCTGGTagggtatgtgtgtgtttgtgattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtgtgtg

Function

GO: NA

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177584 lncRNA downstream 205117 13560519 ~ 13560839 (-) True G141175
TU177537 lncRNA downstream 357764 13407287 ~ 13408192 (-) False AMCG00003164
TU177329 lncRNA downstream 935030 12821902 ~ 12830926 (-) True G140971
TU177299 lncRNA downstream 1026165 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA downstream 1026165 12728274 ~ 12739791 (-) True AMCG00003138
TU177651 lncRNA upstream 6885 13843179 ~ 13843471 (-) True G141221
TU177655 lncRNA upstream 9656 13845950 ~ 13846159 (-) True G141225
TU177695 lncRNA upstream 98990 13935284 ~ 13937709 (-) True G141260
TU177696 lncRNA upstream 135473 13971767 ~ 13971966 (-) True G141261
TU177746 lncRNA upstream 226878 14063172 ~ 14063526 (-) True G141304
AMCG00003164 mRNA downstream 337074 13407272 ~ 13428882 (-) True AMCG00003164
AMCG00003165 mRNA downstream 360759 13396383 ~ 13405197 (-) True AMCG00003165
AMCG00003161 mRNA downstream 424191 13288224 ~ 13341765 (-) True AMCG00003161
AMCG00003159 mRNA downstream 660559 13047336 ~ 13105397 (-) True AMCG00003159
AMCG00003153 mRNA downstream 752986 13012461 ~ 13012970 (-) True AMCG00003153
AMCG00003174 mRNA upstream 12216 13848510 ~ 13871340 (-) True AMCG00003174
AMCG00003177 mRNA upstream 106020 13942314 ~ 13951931 (-) True AMCG00003177
AMCG00003180 mRNA upstream 128587 13964881 ~ 13994367 (-) True AMCG00003180
AMCG00003181 mRNA upstream 218607 14054901 ~ 14061129 (-) True AMCG00003181
AMCG00003187 mRNA upstream 260496 14096790 ~ 14108291 (-) True AMCG00003187
TU177540 other downstream 335632 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 335632 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 886535 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 910615 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 833178 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 1245361 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2911767 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 5707354 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 5716577 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile