RNA id: TU177651


Basic Information

Item Value
RNA id TU177651
length 293
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G141221
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13843179 ~ 13843471 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tGCACTCTCTTTCCATGAGGGTTTGCCTGCCTCACCACACCCAACCCCAGGTGGGACAACGCCCTTGTCCCCCAGGACACACAGCAGCTGAATAAAACTCCATGCACACCTCGACATAACAACAACCCAGCCACCAGCAACCCAGTTACAGATTTACCTGAAGACACAGGCTTTTCACAGGACTCCCTCGCACTCAGACACAGACGGCACCATGGATAAGATGGGATCTGCTTTTATTCAGACCAAGGCAAATGAAGTGATTGAGCAGGCTGGTGAGTACTTTAGATAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177625 lncRNA downstream 6885 13765956 ~ 13836294 (-) True G141201
TU177647 lncRNA downstream 8630 13823414 ~ 13834549 (-) True G141219
TU177584 lncRNA downstream 282340 13560519 ~ 13560839 (-) True G141175
TU177537 lncRNA downstream 434987 13407287 ~ 13408192 (-) False AMCG00003164
TU177329 lncRNA downstream 1012253 12821902 ~ 12830926 (-) True G140971
TU177655 lncRNA upstream 2479 13845950 ~ 13846159 (-) True G141225
TU177695 lncRNA upstream 91813 13935284 ~ 13937709 (-) True G141260
TU177696 lncRNA upstream 128296 13971767 ~ 13971966 (-) True G141261
TU177746 lncRNA upstream 219701 14063172 ~ 14063526 (-) True G141304
TU177747 lncRNA upstream 220329 14063800 ~ 14064171 (-) True G141305
AMCG00003173 mRNA downstream 32043 13797075 ~ 13811136 (-) True AMCG00003173
AMCG00003164 mRNA downstream 414297 13407272 ~ 13428882 (-) True AMCG00003164
AMCG00003165 mRNA downstream 437982 13396383 ~ 13405197 (-) True AMCG00003165
AMCG00003161 mRNA downstream 501414 13288224 ~ 13341765 (-) True AMCG00003161
AMCG00003159 mRNA downstream 737782 13047336 ~ 13105397 (-) True AMCG00003159
AMCG00003174 mRNA upstream 5039 13848510 ~ 13871340 (-) True AMCG00003174
AMCG00003177 mRNA upstream 98843 13942314 ~ 13951931 (-) True AMCG00003177
AMCG00003180 mRNA upstream 121410 13964881 ~ 13994367 (-) True AMCG00003180
AMCG00003181 mRNA upstream 211430 14054901 ~ 14061129 (-) True AMCG00003181
AMCG00003187 mRNA upstream 253319 14096790 ~ 14108291 (-) True AMCG00003187
TU177540 other downstream 412855 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 412855 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 963758 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 987838 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 826001 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 1238184 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2904590 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 5700177 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 5709400 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile