RNA id: TU177655


Basic Information

Item Value
RNA id TU177655
length 210
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G141225
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13845950 ~ 13846159 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAGTCTCgggcatatttatttatttatagatattttatttcaaaactgatTTACAGGCAATGGTCTTCACTCTCAATCTGCTTATGAATTCAAGTCCAAAGCATGTCCCTGAAGTGCAGATTGGTTAAGTTGCCTCAAAGGGCTTAGAAACACCGTGGgattgcagtttgtttgcctGCAGAGTATAGGGAATATGAAAGATCTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177651 lncRNA downstream 2479 13843179 ~ 13843471 (-) True G141221
TU177625 lncRNA downstream 9656 13765956 ~ 13836294 (-) True G141201
TU177647 lncRNA downstream 11401 13823414 ~ 13834549 (-) True G141219
TU177584 lncRNA downstream 285111 13560519 ~ 13560839 (-) True G141175
TU177537 lncRNA downstream 437758 13407287 ~ 13408192 (-) False AMCG00003164
TU177695 lncRNA upstream 89125 13935284 ~ 13937709 (-) True G141260
TU177696 lncRNA upstream 125608 13971767 ~ 13971966 (-) True G141261
TU177746 lncRNA upstream 217013 14063172 ~ 14063526 (-) True G141304
TU177747 lncRNA upstream 217641 14063800 ~ 14064171 (-) True G141305
TU177763 lncRNA upstream 278725 14124884 ~ 14131066 (-) True G141319
AMCG00003173 mRNA downstream 34814 13797075 ~ 13811136 (-) True AMCG00003173
AMCG00003164 mRNA downstream 417068 13407272 ~ 13428882 (-) True AMCG00003164
AMCG00003165 mRNA downstream 440753 13396383 ~ 13405197 (-) True AMCG00003165
AMCG00003161 mRNA downstream 504185 13288224 ~ 13341765 (-) True AMCG00003161
AMCG00003159 mRNA downstream 740553 13047336 ~ 13105397 (-) True AMCG00003159
AMCG00003174 mRNA upstream 2351 13848510 ~ 13871340 (-) True AMCG00003174
AMCG00003177 mRNA upstream 96155 13942314 ~ 13951931 (-) True AMCG00003177
AMCG00003180 mRNA upstream 118722 13964881 ~ 13994367 (-) True AMCG00003180
AMCG00003181 mRNA upstream 208742 14054901 ~ 14061129 (-) True AMCG00003181
AMCG00003187 mRNA upstream 250631 14096790 ~ 14108291 (-) True AMCG00003187
TU177540 other downstream 415626 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 415626 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 966529 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 990609 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 823313 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 1235496 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2901902 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 5697489 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 5706712 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile