RNA id: TU177763


Basic Information

Item Value
RNA id TU177763
length 762
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G141319
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14124884 ~ 14131066 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCTCCCAGTGTTCCCAGTAAAGAAAAGCCTGCACAAGGAAAGGattcattcagtttgttttatttcacatggTGTCCACATTCCTGGTTCCACCCGTCTGTCTGCTCTGCACTGACCTGGTGCTCTGGGACTGTAAGCATCGGGCCTGATCCCTCAGTGGATTTCAGACACAGGCCGTCATTAATGCACTTCCAGATCACAGTACTGGCGCAGTGGCAGTAGGAACTTGAGGAACCAGTCCAGTTCACACCGGTAGGGATCATACAGCACCCCCACTTGCACAACACCACGGAACAATATAATCCAGCTCTTCAATTcataaagaaagacaaaaaatccTTTCCAGCTAACTAGATCAGACTAGATTACTAAGGGTATGGGTAGACTTGAGCTTGAAGCAGAGCAATAATTGCAGATATTACATTTAAGCAGACTGGGATGCCTTGGGGTTTATGTAACGGCGCCTCAAACCTccagcagaaaaagaaaagccccGTCTTTGCACAGATCGAATTCAGAACAGCTTTGACAGCCTTCCAAACTGGTTGTCAAGTTAGGATTGGTAAATATCAATACTGACTTGCCACCTGATGTGTCCCAAACTTGCAGAGAAAACTGCACGTCTCTTTCTGCTTGAGCAAAAGGCACCTACAGGAACATGTCAAAGCAGCGTTGAAGTCAGCTGCTGTtagcactgcactgtgctgtctgTGTCTGGCTGGAGTCTGACCCAGATGTGGGATGAGAATAACACAGATTT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177747 lncRNA downstream 60713 14063800 ~ 14064171 (-) True G141305
TU177746 lncRNA downstream 61358 14063172 ~ 14063526 (-) True G141304
TU177696 lncRNA downstream 152918 13971767 ~ 13971966 (-) True G141261
TU177695 lncRNA downstream 187175 13935284 ~ 13937709 (-) True G141260
TU177655 lncRNA downstream 278725 13845950 ~ 13846159 (-) True G141225
TU177825 lncRNA upstream 242901 14373967 ~ 14374169 (-) True G141372
TU177827 lncRNA upstream 246583 14377649 ~ 14378313 (-) True G141374
TU177857 lncRNA upstream 312765 14443831 ~ 14446505 (-) True G141402
TU178011 lncRNA upstream 499346 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA upstream 528353 14659419 ~ 14659991 (-) True G141520
AMCG00003187 mRNA downstream 16593 14096790 ~ 14108291 (-) True AMCG00003187
AMCG00003181 mRNA downstream 63755 14054901 ~ 14061129 (-) True AMCG00003181
AMCG00003180 mRNA downstream 130517 13964881 ~ 13994367 (-) True AMCG00003180
AMCG00003177 mRNA downstream 172953 13942314 ~ 13951931 (-) True AMCG00003177
AMCG00003174 mRNA downstream 253544 13848510 ~ 13871340 (-) True AMCG00003174
AMCG00003188 mRNA upstream 1954 14133020 ~ 14143426 (-) True AMCG00003188
AMCG00003189 mRNA upstream 49625 14180691 ~ 14188227 (-) True AMCG00003189
AMCG00003190 mRNA upstream 129801 14260867 ~ 14270168 (-) True AMCG00003190
AMCG00003193 mRNA upstream 152339 14283405 ~ 14286345 (-) True AMCG00003193
AMCG00003194 mRNA upstream 159129 14290195 ~ 14305579 (-) True AMCG00003194
TU177540 other downstream 694560 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 694560 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 1245463 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 1269543 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 538406 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 950589 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2616995 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 5412582 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 5421805 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile