RNA id: TU178111


Basic Information

Item Value
RNA id TU178111
length 1881
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G141592
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15252840 ~ 15254844 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGAAGTAAATAGGAGCATGCCGAGACTGTCAATCActctttatttcagaaaatgaattGCCATAAAAATCAGCAAAACACTAAACCTTCAGCTGTGTTTCCACTGGCCTGCAACTGTGTCCCCATGAGAGTGAGGTAGGTGTCCTAGCTTGAAGAAGCTTAACTCTGTGTGTAACACCTCCTGTTGTTAAAGCAAGTCTTCTAGACAATTAAAACAAGACTATGATTAATGTGCTTCTCTTAAGCATTAATTAAGTAACCGTTTCAGTTTGTAGACAGCTAGAAGGCAGGTAGATAAACAAGATgttaataacACTAAAATAAGTTTGTCCTGTTTTCTGGCCCAGAATGCATGTGTGCTGAGGGTGTATTGCCGTACAGCAGGACATGGATAGTATAGCTTTAGCTGGTCTACAGTACAAATAAAGAGAAGTCAATGGTCCAAGGAATGTGCTCCACAGTCCCCAAGCCCCTGACGGAAAAGCAGCTGCTACCCAGGGCAGACCAAAAGCAGAGTCATATTTCTTCAAGTAGTGGTGCAGTTCAGTGTTGTGTTCTGCTTCCCCGTGTTTCTTCTTAAGTGTCCAAATGATAAGCAAACTAGAAATGCACGAGCCCTGTTGACCTCGGGAATGTGCAACTGCTGTGTTGCCACTTGAGGGGTTGTGGCAAATAATAACCATCCAAAGCATTGTAAGTGACAGGGATGTTTCTGAAAGTATATCACTGTTTTGCAGAACTGTGACTTGCTCTTCCCCCACCAAAAAACgggctaaatatttaatttcccatCTCATTCCTGGTTGGTTTCCTGGCCCCATGTTGCCTACACCACTTTGCTGAGGGGGAGGAGGTGTTAGAAAGATGGACAAAGCGATCCCTCTCCATATTTACTCACTTTCCTCTTATCGAAAGCTGCCCCCAAGTTGAAAGAGGCTGGAAGTGACAGCCTCCGAGGACTTgtcgagagagagcgagagacactGTCTTATTGTGAGTAAATTGTTCCGAAATGATGCCTCCACACAAGGGGAGAAGGGTGGATTGGAATgtcttattaattaaaaaaaagttagttaAATTGTCAGACCTACAGCCTCTACATGTGGCAGGCACCCCCATTTAAGAAATCCTGATATACAAAATCTGTCTTGTCTCACACCCATGCCCCCTGGTTTAATACCCCTGCTCTAATCAAATTATTGTTAATCTGGTTTGTGATTCCTGATGGTCCTcttttattcttaaaaacatCTCATATTAAGAACATTAGTTGATCCCCCCATTTCTATATAGGAAATATATGAGATAACCTTTTCTTGTCTCCACTCTCCCCACCTCTGTATTTAATCTACTGTCTCGCTCTGCATTGTACCGGATCTCCCAGATACTGTCTGAAAAAGGGAGTATTATAAACTCACAAATAGCTGTACTGAAATGGGCCAAACACAGTGTACTCGTCcagtttctctctcacacatctATGCCTCTTTTGTATATAGATGAACCCACTGGCATGAGCCTGTGTGTTAAAGGCCCCAACATGACCCACCAGCCAGGCCACCAGATGCTGCTGGCTTTTGCTTCCTGTGGTGCTCTATATCGTGTCACATTTGAGTACAGCTCTGTCAGCACAATACGTGGTCACAGCTCCACAGTGGGATGTAGCTAGACAGAGACCGAAATAGCAGTGAGGGAGGTCTGTGCAGGAGGTTGTGTAGTGTGAGGTAATGGggtcggggtgggggggcatctCGAGGTCCGCTCAGTGACGTTTGGGTCGGGGGTCGGGCTTGTACTTCAGCAGcagggacagagagaaataCCCAAACAGGAAGGTCTGGAAGCACCACAGGAACCGGGCCACCACACTGTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178099 lncRNA upstream 35289 15217242 ~ 15217551 (+) True G141582
TU178085 lncRNA upstream 62495 15189983 ~ 15190345 (+) True G141574
TU178084 lncRNA upstream 66515 15186071 ~ 15186325 (+) True G141573
TU177863 lncRNA upstream 736330 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 744001 14500971 ~ 14508839 (+) True G141412
TU178262 lncRNA downstream 1236582 16491426 ~ 16500980 (+) False AMCG00003257
TU178408 lncRNA downstream 1544115 16798959 ~ 16801312 (+) True G141829
TU178473 lncRNA downstream 1777581 17032425 ~ 17035242 (+) True G141885
TU178576 lncRNA downstream 2262876 17517720 ~ 17517921 (+) True G141955
TU178590 lncRNA downstream 2448328 17703172 ~ 17703460 (+) True G141965
AMCG00003236 mRNA upstream 2436 15240501 ~ 15250404 (+) True AMCG00003236
AMCG00003233 mRNA upstream 36426 15204627 ~ 15216414 (+) True AMCG00003233
AMCG00003238 mRNA upstream 74625 15174130 ~ 15178215 (+) True AMCG00003238
AMCG00003234 mRNA upstream 84866 15163724 ~ 15167974 (+) True AMCG00003234
AMCG00003242 mRNA upstream 91302 15157133 ~ 15161538 (+) True AMCG00003242
AMCG00003237 mRNA downstream 11277 15266121 ~ 15267591 (+) True AMCG00003237
AMCG00003235 mRNA downstream 13377 15268221 ~ 15284542 (+) True AMCG00003235
AMCG00003243 mRNA downstream 33780 15288624 ~ 15301140 (+) True AMCG00003243
AMCG00003247 mRNA downstream 632272 15887116 ~ 15891866 (+) True AMCG00003247
AMCG00003248 mRNA downstream 672924 15927768 ~ 15931031 (+) True AMCG00003248
TU177906 other upstream 647403 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 964098 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 1068197 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 2142206 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 2369842 12878685 ~ 12882998 (+) True AMCG00003141
TU178303 other downstream 1299167 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 2421435 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 3411923 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4280849 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 4364037 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile