RNA id: TU178296


Basic Information

Item Value
RNA id TU178296
length 3582
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G141740
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16494838 ~ 16498441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagcTTTATAAACATCACTTTATTGTGGTTCAATGTCAATTAcaagaacaacacaaaagtCAAAAAGAAGCAtttcaacaaaatgaaaaaaaacagattgaaaaCCAAGATGAAGGGAAAGTGAAAATGCAGCCTTGATAGGGAGTGTGATTCTACCTTGTAGCTCTGATCATTGTATTCAGAAAAAGACAAGAATTCGGTCTCTTTTATAAGGGCTGCGTTGAAATTTCACCAGAGGAAACAAGATGCTAATGTGCAAGGCTGGCTAAGGTTCTCGTTTCTCACAGTCCAGATTGCTCTTGCATCACATTGATAAATGTGCAACTGCAAGATAAAGTACTGCATTATCTGCAAACTGTAATATTGTATAACCATCatattataatgcaaaaaaaggaaaatacttaGCCCAACTAACTGCTATAATGCTCTGTCTTGTCCCAAGCTATGTCCCAAAGCACCAGGAGGGGACAATAGATGGATTGAGATTTTAGCACTAGTCCAGTTTAGAAAGGATTATGAATATTATAGTATATGAATATGACAACATATTCAAGGACAAAAATAGATATGTGCCTGATATTTAGATCTTTAGTTTATTAAAGGTTGCAGGTTATCAAAAGGTGATCAGTCATGGGGGCTTTTTGCAACAACTTTGTGTGAGTAGATAAGGATGTTACAGTAACTCTAATCAACATGTGCATTGCCCTTACTTGTAAAACCTTTACCAAAAGCAGGCCgttattatgaatacattacTGTTTTGAACAAAGTAGGCATGTTTAAGATAAAGCATAACTGCCTTAGAGTTGACACTGTATTACAAGAATATCCTTTTGAAGGATATTTAGCTTTTTTCCCTTACAAACGTGTCAGGTTTGTTATGTTTCATGTAGTTTaagatactatatatatatatatatatatatatatatatatatatatatatagagagagagagagagagagagagagagagacagagagagagagagagcaagtaTGTATCGTGTCAGTGGCAATATAGCTTTTTTACGAAAGCAGAATTATACACAGTAGAAAATGGAGATAAGGAATAAAGAGATGACATCATAGTCCTTGTGATCCTTGGATAAATTCTCTCACATTCGTTTGTAGGTTTAGTAAAGTTGCAGAAAATGGCTTTTAAGAACCCAGGTGGGCTGCAGTCAAAACTACAAAAGTAACCAGCTGAGAAATGTCCATCAGCAAAATAATCTATGAATGCTAATTTGTCAACTTGTATGAAGAGCTACGGTGCAGACAGGCATGACAGATCGATCACCACACTTCCAACTCGAAATACCTCAAACTTTGCAAACAAAGAAGGTAGCTGCTGAGGTTTGttcgtgttttttttgtttagatatTTATTAATGCTTCCATACATTGTTGCAGCATAAGAAAAGTCCTCAAAAAACAGCTAAAAGACAGCGGAAAAGGTGTtaacagaaacagaagaaaaggcTACTTTTGTGATCATTCGTCGCTTTCAGTTCGACATTTCCGCCCGGCAGCCCTGTGCCCGGGCCGCCCTGTGCCAGGGCTGCGGCCGCTCCTTGCCAGTTTGCTTTCTCTTTACAgtgcccacacacacagatacacctcACTCACCTACAGCATACAGTGTAAAGATCCGCCAAGCAAAGAACAAAACCGAAAAAGCATAACTGGAAATGCGAAATTAGCTACACTTATTATATTTTCCACAAACCATGCTCTCAGTGCTGGGCAGAAAGgtaggaaaaataataataataataacagtaagtaattgctgtttatttttcagtagcACTGTTACATTATTCAAATCTCTCttccaaaggaaaataaaataaaataatatatatttatgtatataaaaatagcatGACAATCTCCCCCATTATCCTTAAATTTTTTTATGGGAAATAGCTTTCTAATGGCCCTTTACTGGCAGAACctcatattttaatacatttttttaatatattattctctTATAACAAAGAACGGCTTGCTCAGGCTGAAAATATTCTGCTTGCATTATGTTAAATGAAATGCTATTACAAAATGGGAGGTACATATAATCTTATCCTATCATTTGCTTGCTCTTCATTTTCAACTACAACAAAAGGCTGTACTGGTGATGGGTACAGGCCTAGAATTGAGTATCTCCATGGTAACCAGTGTGCCAATTGGTCCCACAGAACCTGCTCGAGAGCGACGCACCCAGCAGGACAGCACATTACAGCGCAGCACACAGCACAACTACCACACCAGATACATGTTAATTCATATCTTAAGGGAGAGATATGGCTCATTAGTTTCGGAAGTGACAGTATCATTCTGTAATCTGTTTGTAGTCTTTAGTAGCCTTAAGTATAGCTGCAGCTCTTCTGCAGAAAACAGTAGCACTTCTGGCAGGTAGAAATTCAGATAAAAAACACAGTCATATCAAATGCAACTTTTCGCTAACAGCGTCGTACTGAGTAGTTAAGCATTCGGTACACAGACATGGTTATTTAAGGACGGGTACGAGGATTACACAAAAGCAAATTCGTGAAAAGCGGGTGGGAATATTTCCCAgcacaaaacaagcctatttctATGCCTCGatttatttgcttgtatttACAGTGAGATAGATATTGAACATGAAGGACACCTAGTGGTTTCaggcagtttttgttttctctcaaaaCACCTAAATACAAGCAGGTCACCAGTAATAAAGCAACGCCTTTTTTTCCACATCAAACTGTGAGGCTCTCTCTGTTGCTAAATTATATCTCGCAGATTAGTAACAGCTGCCAGGCCTTAGAGTTCCTGATGCTGGCTTTAATTGGCTCGTTAGCATGGAAACCCATTTGGATGCCTTGAGGTTCTACTAATAAAGTTCCATTTTATTAGGGCAAGAAATGAATAtgacaaaagaaaaggaagccGTTTCCATTCAAAGCCATTAGAAAACAAGCACACAGATGAAGGTTCGCGTGTCGTtaggattgttttgttttatgagttTGGATTTTCACTTTCAGAATAAATGCgtttcttttccctcttcgCGGGCGTTGCAAAGAGGTCGGTAACCCAGGTGTAGCTGCCCGAGACAAGGCCGACCCTTCCCGTTTTAGCGGAAGCAAGAAGAAAAttgaaaaggaggaggaggaagaagaagagagttgttttgctttgtttttgcttcCTTTGTGGTTGTCAAtatcatcaaaaaaaaaaaaactctacatGTATATTACAATATCTGAGTgataactttgtttttgtttataaataacacatgcatGGTCTGATCTTTAGAAGAGTTTCGCCTTTTTCTTCATGTCGTTGCGTTTCCAGAGAGGCAACCTATCGAATTCCTGGATTTGCATTCCAAATATATCAAAGAAAACTTCAGGAGCCAAGTGGCGCTGGAGAAAGAAACACAGCGGGAGAGAAGCAGTCAGGAACAGCCAAGGGAAGATAACTCAAAGACAAATCTgaacagcacatttatatatttaaaaaaacaactgtctATGAATATTATGTTCAGAATCTGTCTAGTACTAAGAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178234 lncRNA downstream 433800 16008063 ~ 16061038 (-) True G141704
TU178210 lncRNA downstream 502160 15988935 ~ 15992678 (-) True G141681
TU178100 lncRNA downstream 1277031 15217474 ~ 15217807 (-) True G141583
TU178082 lncRNA downstream 1322390 15163954 ~ 15172448 (-) True G141571
TU178079 lncRNA downstream 1340468 15154016 ~ 15154370 (-) True G141569
TU178367 lncRNA upstream 155250 16653691 ~ 16656167 (-) True G141795
TU178459 lncRNA upstream 416497 16914938 ~ 16919500 (-) True G141871
TU178467 lncRNA upstream 439193 16937634 ~ 16938046 (-) True G141879
TU178713 lncRNA upstream 1788562 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 1806190 18304631 ~ 18304978 (-) True G142064
AMCG00003255 mRNA downstream 128852 16347424 ~ 16365986 (-) True AMCG00003255
AMCG00003254 mRNA downstream 153089 16331807 ~ 16341749 (-) True AMCG00003254
AMCG00003250 mRNA downstream 227446 16237412 ~ 16267392 (-) True AMCG00003250
AMCG00003251 mRNA downstream 274575 16211441 ~ 16220263 (-) True AMCG00003251
AMCG00003252 mRNA downstream 577291 15900357 ~ 15917547 (-) True AMCG00003252
AMCG00003274 mRNA upstream 68330 16566771 ~ 16590833 (-) True AMCG00003274
AMCG00003277 mRNA upstream 116879 16615320 ~ 16620560 (-) True AMCG00003277
AMCG00003276 mRNA upstream 166299 16664740 ~ 16665930 (-) True AMCG00003276
AMCG00003266 mRNA upstream 182612 16681053 ~ 16710859 (-) True AMCG00003266
AMCG00003270 mRNA upstream 230473 16728914 ~ 16737927 (-) True AMCG00003270
TU178070 other downstream 1377321 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 1820418 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 3064514 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 3064514 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 3615417 12861426 ~ 12879421 (-) True G141004
TU178404 other upstream 249620 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 3045207 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 3054430 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 3057002 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 3066954 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile