RNA id: TU178404


Basic Information

Item Value
RNA id TU178404
length 371
RNA type TUCP
GC content 0.59
exon number 1
gene id G141826
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16748061 ~ 16748431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGGTGTCGGTGAAGGTGCCGGCACAGAAGGCCACGATCTGAGTCAGGTCGTCCACTGCATGGAAAGAGATGAGTCCAGCTGGGTAGCTGAGATAGACGCCAATCCTGTTATAGCTTTGGCTGATTGGGAGTTGGTGGGACACCCCGTTGTGCCAGGCGGTATAGTCCCCTTCGAAGAACTCCACGCACCAGGAgtcctctcccctccccagcCAGCATGTCTCCTCCCTGCCTTTCCTGGGAATGCTGGGATAGGTGAGCCCCAGCTCCCAGTAGGTCTTTCCACCAACCTCCAGCTCCAAGTAATGCCTCCCATCTGAGAAGCCCTCGGAGCTGATGACGTTCAGGGTGGTGTCAAAGCGCACCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178367 lncRNA downstream 91894 16653691 ~ 16656167 (-) True G141795
TU178296 lncRNA downstream 249620 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA downstream 249620 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA downstream 249620 16494838 ~ 16498441 (-) False G141740
TU178234 lncRNA downstream 687023 16008063 ~ 16061038 (-) True G141704
TU178459 lncRNA upstream 166507 16914938 ~ 16919500 (-) True G141871
TU178467 lncRNA upstream 189203 16937634 ~ 16938046 (-) True G141879
TU178713 lncRNA upstream 1538572 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 1556200 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 1557931 18306362 ~ 18306683 (-) True G142066
AMCG00003270 mRNA downstream 10134 16728914 ~ 16737927 (-) True AMCG00003270
AMCG00003266 mRNA downstream 37202 16681053 ~ 16710859 (-) True AMCG00003266
AMCG00003276 mRNA downstream 82131 16664740 ~ 16665930 (-) True AMCG00003276
AMCG00003277 mRNA downstream 127501 16615320 ~ 16620560 (-) True AMCG00003277
AMCG00003274 mRNA downstream 157228 16566771 ~ 16590833 (-) True AMCG00003274
AMCG00003267 mRNA upstream 1318 16749749 ~ 16757177 (-) True AMCG00003267
AMCG00003269 mRNA upstream 39800 16788231 ~ 16798189 (-) True AMCG00003269
AMCG00003275 mRNA upstream 51259 16799690 ~ 16821020 (-) True AMCG00003275
AMCG00003273 mRNA upstream 77774 16826205 ~ 16829451 (-) True AMCG00003273
AMCG00003271 mRNA upstream 105024 16853455 ~ 16862724 (-) True AMCG00003271
TU178070 other downstream 1630544 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 2073641 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 3317737 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 3317737 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 3868640 12861426 ~ 12879421 (-) True G141004
TU178860 other upstream 2795217 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 2804440 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 2807012 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 2816964 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 2818482 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile