RNA id: TU178408


Basic Information

Item Value
RNA id TU178408
length 2326
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G141829
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16798959 ~ 16801312 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCcatgtaaatgtattgcaatgtgTCTGCAAAACAGCTTAGCTTCTAAACACACACGTTAAACCAAGTTAAACCAGTCAGCTGGAGTTTTATTCAAAGCACAAggataaaaatatacatttgtattttttacaagtcttttataaaacattatcatacagttttgttttcagtagcGTGCCAAATGATGAAATAATGCATCCCATTTTCACAAAGATAAACGGTTGTTACAAGATATTGTGGAGGTTCCTGGTCTACTCTTGAAGAAAAGCACTTTCTAAGACCCAAGAAAGCAAAAGGATTTTCTTTGAATATACCTAGCTTAGCTTTCTTCCTAattttcattcaaaaacagGAATGTCCTTTAACACCTCATGCTTCTTCACTGTTAGTCatggacattttaaattatctaTGAGAAGGGTGATaatcacacaaaatgcaatcaTAATCAATACCAAATTCATAGTGTGTGTGTCGTGCTTAGAGGAATCacacagaacattaaaaatggTCACGGCCTCCATTGAGCAAAGCAAAGTGTTTTGTTCTTACCAATGGAAGTATCATCTTCTTTAATGAGTTTCAGCTTCTTTTGATGGCTACTGCAGCAGCACATATAAATCCCCAGTGAGGCAGTACTGTATTAAatgtagtaaaaataaaacatatatatatatatatatatatataaattatattaaaaaaaaacaaaaaaaaaaacacaacattctTGAATGCTTTGGAGACGTGCAATAAACTGGAGGCAGAGAGGAAGACTGACTTTGAAACAGCTCAACATTGAAAACCAAACCTGCCGAAATGGATGTCAGCTGAACTGCTTTATTcagatgagaaaaaacaaatcacttgaCACTGAAGTGAACACATTCTCAGTTTGCAGCATAGATATTTTggaaattaaacattatgtcTGACAAAGCAAAATCCACTGTTCTGCCAAATGCCATCTTCACCAGACTTACAGTTGATAACCAAAGCCTGgttttggcaaaaaaaaaaatacagacaggATTTGAATCTTTAGatttttaacaacaaaatatggaatattctgcaaaaatattttgcatttttggcatgcttaaaacatattttgtgggATTCGCTTTTCTTAAGCTTAGGCTTAAAACCAGCACCTGGTTCTGCACTTTTTCGGTTCCTCTTCCAACTGGATCAGGAGAAGAGGAACAATTTAAGCCACGAGTGTAACTTCATGGCTTAAAGTATCTCTTGATAGAGTACATTACATCTGCTTATCTAAGGCTTAATTCAGAGGCCAACAGAAGAAAAGCATCAGTGCCCATGTGTATTGTACCACTATGCATTAACACTGTGCCAAATTCTCAGATCCCCTTCCACCTGGTTCCTGGCGTCTGGTTAAAAGCCACAGCCTCCGAGACGTCTGTAGAACAGCAGGTTACTTAAGTGCACAAGTTGATGTTATTTACTAGGCTCGATCAACTGTGTTTCACGACTTTTACTACTGTCACCAACCAGAAGACGGATTTCCTTTTGGCAAGCCCTACCTCTCGAACAATCTTTAATCCAGTGTTTCACTCTCTTGTACATTACTTATGCGTTCCTCGCTATTCATGTAAATCACAAGTCCATGGATCTATGTTTGCTCAAACATGCACCAATGACCTGGAAACTGGTGaagtatttgtacattttcaataactgcaGAAAATGAAAGGTAACCATTCTTATAAATGATGCAAATACCTGGTAAGAAAGCTgacaaataaaagcacaatccCTTTTAGATTTGTAAATTCACTATTTCCACACTTGTACTTTGTTCTGTGTATCGTAGTTTTGTAACACTGGTGAGTTTCCAAAATAACAGCTTACGGAACTCCAAtcccaaaccaaaccaaactcGAGGTCTGGCTCGGCTTCCGGTGGCGTCCTCGCGCGAGTACGGAGGAAGATACGCTTCAAAAGATACAAATGTCGAAGAACTATAAATATATCATCTGTTGTATAGTATCAGCAGCACTGAAAGGTCCCAAGAAGCACTTGCAACTCCAAGGAGAAAAGATCCTCTGTATAAATAAGGCACCAGTCCTGGTTGGTAGTTTGATTCAGTGGCTCTTCCCACTGGCTGGCTCTTCAGGTGTACTCTGATTTTCTGATGTAATTGGACGGGACGTACCCTCGCCTGCCCTCCACCTCGCCCAGCCACCACTCCTCGTTGCCATTGAGGTCGTGAAACTCCAGGATCTTCACTCGCTGGTGGGCAGATATGCTCAGCTCGTTGGCACAGCGGGCGCTGAAGGAGTAGATGGCATAGTAGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178262 lncRNA upstream 297979 16491426 ~ 16500980 (+) False AMCG00003257
TU178111 lncRNA upstream 1544115 15252840 ~ 15254844 (+) True G141592
TU178099 lncRNA upstream 1581408 15217242 ~ 15217551 (+) True G141582
TU178085 lncRNA upstream 1608614 15189983 ~ 15190345 (+) True G141574
TU178084 lncRNA upstream 1612634 15186071 ~ 15186325 (+) True G141573
TU178473 lncRNA downstream 231113 17032425 ~ 17035242 (+) True G141885
TU178576 lncRNA downstream 716408 17517720 ~ 17517921 (+) True G141955
TU178590 lncRNA downstream 901860 17703172 ~ 17703460 (+) True G141965
TU178591 lncRNA downstream 911348 17712660 ~ 17712864 (+) True G141966
TU178596 lncRNA downstream 919985 17721297 ~ 17725302 (+) False AMCG00003291
AMCG00003263 mRNA upstream 9001 16771324 ~ 16789958 (+) True AMCG00003263
AMCG00003262 mRNA upstream 50433 16745224 ~ 16748526 (+) True AMCG00003262
AMCG00003261 mRNA upstream 76897 16711272 ~ 16722062 (+) True AMCG00003261
AMCG00003259 mRNA upstream 127527 16665434 ~ 16671432 (+) True AMCG00003259
AMCG00003258 mRNA upstream 145392 16625450 ~ 16653567 (+) True AMCG00003258
AMCG00003264 mRNA downstream 113653 16914965 ~ 16930855 (+) True AMCG00003264
AMCG00003265 mRNA downstream 132209 16933521 ~ 16941107 (+) True AMCG00003265
AMCG00003281 mRNA downstream 505188 17306500 ~ 17311221 (+) True AMCG00003281
AMCG00003282 mRNA downstream 531022 17332334 ~ 17354879 (+) True AMCG00003282
AMCG00003284 mRNA downstream 575761 17377073 ~ 17402750 (+) True AMCG00003284
TU178303 other upstream 239753 16554011 ~ 16559206 (+) False AMCG00003256
TU177906 other upstream 2193522 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 2510217 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 2614316 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 3688325 13106456 ~ 13110634 (+) True AMCG00003158
TU178585 other downstream 874967 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 1865455 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 2734381 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 2817569 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile