RNA id: TU178467


Basic Information

Item Value
RNA id TU178467
length 393
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G141879
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16937634 ~ 16938046 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctccctttaagagagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcaccacgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178459 lncRNA downstream 18134 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 281467 16653691 ~ 16656167 (-) True G141795
TU178296 lncRNA downstream 439193 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA downstream 439193 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA downstream 439193 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 1348957 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 1366585 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 1368316 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 1897494 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 2610595 19548641 ~ 19548932 (-) True G142176
AMCG00003268 mRNA downstream 24255 16908004 ~ 16913379 (-) True AMCG00003268
AMCG00003272 mRNA downstream 59502 16863943 ~ 16878132 (-) True AMCG00003272
AMCG00003271 mRNA downstream 74910 16853455 ~ 16862724 (-) True AMCG00003271
AMCG00003273 mRNA downstream 108183 16826205 ~ 16829451 (-) True AMCG00003273
AMCG00003275 mRNA downstream 116614 16799690 ~ 16821020 (-) True AMCG00003275
AMCG00003279 mRNA upstream 43823 16981869 ~ 17071511 (-) True AMCG00003279
AMCG00003278 mRNA upstream 196063 17134109 ~ 17138040 (-) True AMCG00003278
AMCG00003280 mRNA upstream 270389 17208435 ~ 17263614 (-) True AMCG00003280
AMCG00003283 mRNA upstream 354470 17292516 ~ 17304410 (-) True AMCG00003283
AMCG00003287 mRNA upstream 374518 17312564 ~ 17325306 (-) True AMCG00003287
TU178404 other downstream 189203 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 1820117 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 2263214 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 3507310 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 2605602 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 2614825 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 2617397 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 2627349 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 2628867 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile