RNA id: TU178585


Basic Information

Item Value
RNA id TU178585
length 2244
RNA type TUCP
GC content 0.44
exon number 1
gene id G141962
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17676279 ~ 17678522 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTGCATGATTGTGTCCAGAACACGAGAGGAGATTGACAGTGGggcaaacattttaatgtgcttGATCAAtctgttttcacacaaaaacacttaTGATGGCTTTGAATTTACCCAATATAGACATCTATTTCAAATACTCGACATTGCAATACTTACTGTACATGTAGCAATATAGCCAGATTCCAAAATAATATTCCTGTTGTTGAAAAATGCTTGgctttttacaagaaaaaaatagcattttttacatttaaatatgggTTCCTTGTAGTTACAGACGTGAACAATTACAAACGGTTTCATTTGGAGAGCTTTCAGATTAGAAGTCCTTTCATATATCATTTACACAGTCCTTTTAATTTCTCCTTTCCAGAGGATCTTTTTAAAAGACCTCCTAAAGTCGTGGTtgaatattgtgtatataactGGATTCAGGGAGCTATTGCAATACCCAAACCAAAAGAAGAATTTGAACAACGTCTCCGGGACGCAGCAGGAGCCGCATATGGCGGTCAGTGTGTATGTGAAGAAAAACGGAAACCAGCAGATGACAAAAACCCCTATTACTACAGCCAGAACGAAAGTGAACCTCTTTTCTCTGTTCTGCCGTCCTTTCCACCTGGAGCCCTTGGTGCTTTGATCGTCTTCCTTTTTGGGGATGCTATCTCCGGGTTTGATCTGGCTCAGTTTGGTCTTTCCTTTCCCACgattcttgttctttttcttaatGGAGCAGGGGTTGTTCACGTTCTGATCAGAAGAGGAAGACTCATCCAAGTCCATCCCATTGAGTTCAGCCTCTCCAGGCCCGTCCTCGTCTTCATCATGGTGTCCTTGGTCCCCGTTTAACTTCTCGGGGCAATCCTTGTCCACAAAGCCATTCTGCTTCTTGTCCGCCTCGTCTTTGGACCGTTTACCCGGAGGGATCCGCGTCCTATTCTTGGCGATCTGGTAAATTCGGACGTAGACCAGGATCATGATGATGCAAGGGGCAAAGAAGGAGCCGATGCAAGACGAGATGATGTACCACTTCTGCTCGTTGATCTTGCACGTCGGACTCTCTTCCTTGCCGCCCTCCTTCTTAATAGAAATCAAAGGGGGGAAGGATATGACCGCCGAGATGACCCACACGATGAAGATGATGCATTTGATCCTCCGGGGAGTTCTCTTAAGGTTGTACTCGATGGCTTTGGTGATGGACCAGTACCTGTCCAGGCTGATGGCGCAAAGATGCACGATCGAAGaggtgcaaaacaaaacatccaagGCCAGGTAGATTTCGCACCAGACTTTGCCAAAGTACCAGTAGCCCATGAGTTCATTGGCTAGTGAGAAGGGCATCACCAGAGTGGCCACCAGGATGTCTGCAGATGCCAAGGAGACTAAAAATAAGTTCTGTGGGGCTTTCAGGGCCCGGCTTGTAAACACTGCGATGACAACAAGGACGTTGCCAAATACTGTTAAAAGAATCAGGATCCCTACAAGTATCGTAATGGATACTGTGATCTGAACTGTGTAGGGTGGACCCCCCAGGGAAGTTTCGTTTGTTGCGTTTTGGCAACCCATTGGAAACAATCTGATTTCCTGTATAGGATTGTGTAAGTTGATCGATTGATTTTCTGAAAGGGGTGTTTAAATAGTGTCAATTAGACTTCCCCTTGAATAACTTCCATCGTtgcttttcagttcagtttcagtCTTTCAAATGACTTCCAGTGTTGTTTGCCGATTGGTTTGTTGCAGCAGGAAGGGGGTCACAAAGTTAGATCTTCATTTTGAGAAGgcatgacaaattaaaaacaaaagcgaCGCTGTTCAAAGTTCAGAGTTTGCGTAAAAACAGTGCGCTGACGACTGTTTCGGCcaactttttcttcatttttcttgtACTAGTGAAATTACAATCGGGCAATAAACAAAAGTCCGAAACCCACTGGTAGTAAGAAACCCAATCTTCTTACCTTGGGTGATGATGATGTCTGTGTCATAAATAAAAGTCCGCGGATCACCTTTACGCATAATTGCGCGAAGGTAACTTACGCGCGTCTGGCATGGCGAGGGGGATTGTGCAGAACGCGATCCCCCGCGGGTCTTCAAGTGGtggtcagaaaaaaatattcagaaatcATGTAGAAGTGGCATTATACTGTTTACGTCTTATCTGCGTTATTATCCCAGGTTGATCAGGATGTGCTTCACCCATACACATAGCAGCGCAGTAATCCTGTCGGCTTGTGGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178576 lncRNA upstream 158358 17517720 ~ 17517921 (+) True G141955
TU178473 lncRNA upstream 641037 17032425 ~ 17035242 (+) True G141885
TU178408 lncRNA upstream 874967 16798959 ~ 16801312 (+) True G141829
TU178262 lncRNA upstream 1175299 16491426 ~ 16500980 (+) False AMCG00003257
TU178111 lncRNA upstream 2421435 15252840 ~ 15254844 (+) True G141592
TU178590 lncRNA downstream 24650 17703172 ~ 17703460 (+) True G141965
TU178591 lncRNA downstream 34138 17712660 ~ 17712864 (+) True G141966
TU178596 lncRNA downstream 42775 17721297 ~ 17725302 (+) False AMCG00003291
TU178597 lncRNA downstream 42775 17721297 ~ 17725302 (+) False AMCG00003291
TU178636 lncRNA downstream 160189 17838711 ~ 17840604 (+) True G141999
AMCG00003284 mRNA upstream 273529 17377073 ~ 17402750 (+) True AMCG00003284
AMCG00003282 mRNA upstream 321400 17332334 ~ 17354879 (+) True AMCG00003282
AMCG00003281 mRNA upstream 365058 17306500 ~ 17311221 (+) True AMCG00003281
AMCG00003265 mRNA upstream 735172 16933521 ~ 16941107 (+) True AMCG00003265
AMCG00003264 mRNA upstream 745424 16914965 ~ 16930855 (+) True AMCG00003264
AMCG00003291 mRNA downstream 42722 17721244 ~ 17725381 (+) True AMCG00003291
AMCG00003295 mRNA downstream 213701 17892223 ~ 17896705 (+) True AMCG00003295
AMCG00003301 mRNA downstream 362253 18040775 ~ 18059015 (+) True AMCG00003301
AMCG00003302 mRNA downstream 382914 18061436 ~ 18073141 (+) True AMCG00003302
AMCG00003305 mRNA downstream 627524 18306046 ~ 18339835 (+) True AMCG00003305
TU178303 other upstream 1117073 16554011 ~ 16559206 (+) False AMCG00003256
TU177906 other upstream 3070842 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 3387537 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 3491636 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 4565645 13106456 ~ 13110634 (+) True AMCG00003158
TU178734 other downstream 988245 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 1857171 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 1940359 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile