RNA id: TU178720



Basic Information


Item Value
RNA id TU178720
length 322
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G142066
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 18306362 ~ 18306683 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGCCAGACCAGTGCACCATGGCTTGGTTGTGAGCAGAGTCCCCAGTCAAGGCGAAGGTGGAACTGGTCAGTTTCAAGTCGTCCTGTCCAGCATTGCGCATCCTGCTCTCCTCGCTGCTCCATCTAAACTCAGACCGGATCAGTCTGCGCCCCGGCGCCGAGGCGCTGCGCTCTCGCCGGGGAACCGGAGCCAAGGCACCCCCGTCCAGTGCAATGGATGATCTCGATGCTTTATTCTCCTTTCCAAGTCCAGGGCTGCTCCTTCTATTCCTGGGCAAATGATCAGCGTGCATTTTATTCACAGGAGTTAAAAGTGGagccg

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU178718 lncRNA downstream 1384 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 19150 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 1368316 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 1386862 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 1650195 16653691 ~ 16656167 (-) True G141795
TU178747 lncRNA upstream 528857 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 1241958 19548641 ~ 19548932 (-) True G142176
TU178890 lncRNA upstream 1290646 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 1874112 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 2068703 20375386 ~ 20375626 (-) True G142357
AMCG00003303 mRNA downstream 227375 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003304 mRNA downstream 335752 17939871 ~ 17970610 (-) True AMCG00003304
AMCG00003300 mRNA downstream 379379 17924912 ~ 17926983 (-) True AMCG00003300
AMCG00003299 mRNA downstream 399954 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003296 mRNA downstream 449842 17849780 ~ 17856520 (-) True AMCG00003296
AMCG00003307 mRNA upstream 535623 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003310 mRNA upstream 741993 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003309 mRNA upstream 775668 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003308 mRNA upstream 814177 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003313 mRNA upstream 925128 19231811 ~ 19254717 (-) True AMCG00003313
TU178404 other downstream 1557931 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 3188845 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 3631942 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 4876038 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 1236965 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 1246188 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 1248760 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 1258712 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 1260230 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile


TU178720 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
End of interactive chart.

TU178720 Expression in each Bioproject

Bar chart with 1 bar.
TU178720 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.