RNA id: TU178747



Basic Information


Item Value
RNA id TU178747
length 1946
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G142090
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 18835540 ~ 18837485 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ataaaacaaaattacatcagataaagtttacaaaagatAGAGATAACTGTCATATTGGCAGCTGACATTTACTGATAGCAAGGTAAAGGCAATGAAGCGGTAGTCCGGACAAATACTCGGGCTGCAGAAGTTGTGTATGatttttgttgctgtgttttttgtttgttttcttgaagaaggTATATACTAAAATTGGGTACTGTTGCTTAGCACTAACTATGCTTGACCATTAGTGTCATTAGAGCTGAGAAACCTACTGTAAATAAGAGGACCATATTGGTAGAATTGAAGGTCGAAAGggtaattcaaaatatttttccccCTAAACAGCAGTACAGTCTGTTTTGATCAAAGCTGAATAGCATgctcattttacatttaagttaTATACTGCAGTCCCAAGGATTAAGTTGGGGCACATGTGGGACAATTTCATTTCTGGCACATATTGGACACATAGTACCATTTCATTTCACTCTATCTTTACAAAGTgaaaagaataatttaaaaagtgaacatGGCCACAGAAGGATAAAGTCAGCTTGTGTTATAAaacgagagagaaaaaatattccTAGAAATAGTAATCCTAAAGCGTGTATTAAAGTACAATGGGTTATCAGcttaattttcttctttaaatgcTGTTAGATACTATCTATACATACTTAACACTGCAGACTACGTTGAATTTGAACTATTGTCCATTCAAGGACTTATTTGTTAGCTGAATAGTtgcttctttctttgttttgtgtctgtgaaTTTAAGTGCATTTACCTCTTTATCTTATCACGCGTCACCTTCAAAGGAGTCCGACGCAGACAGCTCAATCTGCGCACCTCCTGTACATCTGGTGTTGCTATAGCACTGACGAGCACGGATAGGTGGATGGTTTGTCTTACATCCCACTGATTTACATCTCCGTTTTCTGCATGCAGGAACTTAACATAATGGCACGCTGATGTCAGCATGTAATTACATGCACAGCAGCACCAGATAGTGGAAATATGCAGGTGTTCATATATCACACAGTTGGAGAAAAGCTGGAAAGCTTCAAAAGTACAACAGGACTTAAGAATATTGCTTAGGTAACAGCCTGTTCAATATGACCTTTTAATTAACTTGAGTTTCTTTTGCAATTTTTTGTCAGCCTACTCAGGCTCAGGTTCACCATACTGAACAACTGTAGTTATAGAGGCTTTAACAGTACATGGGTTACTGGTAACAGGGTAGGGATACATGGATAAAAGGATAATAGATTATACTTTTGACTTGCGATTATAACTGCAATCAGgtcaaaaattaaatattgcatatattgACTgctaaattatacttttttttttttccccatatcAGATCTTCcccattacaaaaataattgtaccaACCATGGATTAAATGCTTCAAATAAACTCTCCTCATTGCCAGTTAAGCGATGCCATCTGAAGCTTCAAATTGTGAATCATTCTCAATAGGCTGGTAACTTCTGGCTTCAGAAACACAAAGTGAGTCTTGAGCATCCCATTACAGTAGCTGGCTGCCATCCTGTTTTCTATAAACATGCTGTTTACCTTCAGAATGTGCCATATCAGAATTCTGTACAAACGTGCAGAGTTAGTTCACCTACATGGGATTATTTTGCTTGTCaatatttaatcagtttttggAAAAGGATATAAAGATGTAGAGCTTTTGCAAGGGGTTGTATTGagtgaaaatgaaaggaaggaGGATAAATATAATTCTTTGGCAGGTGCACATCTTAAATCACTATAAAACGTTCAGTGGGCAAACAGTTGCAACATTTTGTGTGCACAGAAACTATGAATGCATGCATCATCAAATATATTGTTCTTGGgtttcttgtttatttcaatatttctacTGTAAAGAGACtgtcattttgaaattgttgaaaataaatgtatttttgtacatcA

Function


GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU178720 lncRNA downstream 528857 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 530562 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 548328 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 1897494 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 1916040 16914938 ~ 16919500 (-) True G141871
TU178861 lncRNA upstream 711156 19548641 ~ 19548932 (-) True G142176
TU178890 lncRNA upstream 759844 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 1343310 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 1537901 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1817578 20655063 ~ 20669631 (-) True G142404
AMCG00003303 mRNA downstream 756553 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003304 mRNA downstream 864930 17939871 ~ 17970610 (-) True AMCG00003304
AMCG00003300 mRNA downstream 908557 17924912 ~ 17926983 (-) True AMCG00003300
AMCG00003299 mRNA downstream 929132 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003296 mRNA downstream 979020 17849780 ~ 17856520 (-) True AMCG00003296
AMCG00003307 mRNA upstream 4821 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003310 mRNA upstream 211191 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003309 mRNA upstream 244866 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003308 mRNA upstream 283375 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003313 mRNA upstream 394326 19231811 ~ 19254717 (-) True AMCG00003313
TU178404 other downstream 2087109 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 3718023 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4161120 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 5405216 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 706163 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 715386 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 717958 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 727910 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 729428 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile