RNA id: TU178857



Basic Information


Item Value
RNA id TU178857
length 494
RNA type TUCP
GC content 0.50
exon number 4
gene id G142172
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19535693 ~ 19537091 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCAAGACATTGCAGAGGACttaaagaagcacaaagaagATGTTGATGCCTTCAGAGAGACCTATGataacactgttgcagaagacAAACTGCGTGACCGTGGTTTCAGAAAGGACTTCTTTGATGTCCCTGGCCATGTAGTAGAAGACCTGTACAAACTTTTTAAGCGCCGACCCAGGGTGCAGAAAATGAGGACAGAAAACAGCAGTCCTTTCAAAGACCGTGCAGGGTCCGCAACAGCACCGGATGAAGGCCTGTCTCAGCTGATGAGAGCCATGGAGGAATTGGACGTCCCTGAAAACATTCCACAGGGCGTGGACCTGGCTGTGTGGGAGCGCTTCTGTCTGGCCAGGAGAGCCAAGGTTGAGAGCGAACATCAAGTTCAACAGAAAGCGCTGACACTTGCTGAAATGCAGGCTTTTCTACAGAGGAGAACAGAGGAGGATGACAGTGCCAGAAAGGAGATTCAGAACCTCACTGATGAGCTCAATGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU178854 lncRNA upstream 3826 19531412 ~ 19531867 (+) True G142170
TU178826 lncRNA upstream 22561 19512483 ~ 19513132 (+) True G142146
TU178743 lncRNA upstream 692964 18842454 ~ 18842729 (+) True G142086
TU178742 lncRNA upstream 694940 18835540 ~ 18840753 (+) True G142085
TU178740 lncRNA upstream 778506 18756913 ~ 18757187 (+) True G142083
TU178859 lncRNA downstream 3951 19541042 ~ 19541247 (+) True G142174
TU178883 lncRNA downstream 56787 19593878 ~ 19594267 (+) True G142194
TU178895 lncRNA downstream 79170 19616261 ~ 19616567 (+) True G142205
TU178899 lncRNA downstream 81790 19618881 ~ 19633073 (+) True AMCG00003323
TU178921 lncRNA downstream 117275 19654366 ~ 19656155 (+) False AMCG00003324
AMCG00003315 mRNA upstream 80727 19415692 ~ 19454966 (+) True AMCG00003315
AMCG00003311 mRNA upstream 310737 19210583 ~ 19224956 (+) True AMCG00003311
AMCG00003312 mRNA upstream 339877 19185133 ~ 19195816 (+) True AMCG00003312
AMCG00003306 mRNA upstream 1041903 18439507 ~ 18493790 (+) True AMCG00003306
AMCG00003305 mRNA upstream 1195858 18306046 ~ 18339835 (+) True AMCG00003305
AMCG00003316 mRNA downstream 32713 19569804 ~ 19573974 (+) True AMCG00003316
AMCG00003321 mRNA downstream 51543 19588634 ~ 19605421 (+) True AMCG00003321
AMCG00003322 mRNA downstream 73663 19610754 ~ 19614023 (+) True AMCG00003322
AMCG00003323 mRNA downstream 82507 19619598 ~ 19633150 (+) False AMCG00003323
AMCG00003324 mRNA downstream 114085 19651176 ~ 19658477 (+) True AMCG00003324
TU178734 other upstream 843489 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 1857171 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 2976487 16554011 ~ 16559206 (+) False AMCG00003256
TU177906 other upstream 4930256 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 5246951 14287807 ~ 14288742 (+) False AMCG00003195
TU178898 other downstream 81790 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile