RNA id: TU178861



Basic Information


Item Value
RNA id TU178861
length 292
lncRNA type intronic
GC content 0.51
exon number 1
gene id G142176
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19548641 ~ 19548932 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCAACCACAAACTCACGCCACCTCCTCACGACACAGCCAGCGGGTCCGAGTTATTGTCAGCCGCTCGTCCGGACTCGGGCCGGTCAGCGGCAGCAGGCCTGATGATGGATCGTACCTTCGCCATGTCGGTCCTTCCTTCCTCTCGACGATTTTGGCTCACACTAATACAATTTACGCGAcgaatgaaaaacaataacagaaattGGGACCGATGTTAACAAAGATAAACTCGTTAGTCTCCGTACGCAATGCACTACAACAAACTGATCGACGTCTCAATACCAACTACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU178747 lncRNA downstream 711156 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1241958 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1243663 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 1261429 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 2610595 16937634 ~ 16938046 (-) True G141879
TU178890 lncRNA upstream 48397 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 631863 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 826454 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1106131 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 1110680 20659612 ~ 20743604 (-) True G142406
AMCG00003319 mRNA downstream 60439 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003317 mRNA downstream 85776 19456531 ~ 19462865 (-) True AMCG00003317
AMCG00003314 mRNA downstream 133819 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003313 mRNA downstream 293924 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003308 mRNA downstream 419259 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003318 mRNA upstream 25993 19574925 ~ 19586023 (-) True AMCG00003318
AMCG00003325 mRNA upstream 84956 19633888 ~ 19654154 (-) True AMCG00003325
AMCG00003326 mRNA upstream 107733 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003330 mRNA upstream 151054 19699986 ~ 19706889 (-) True AMCG00003330
AMCG00003336 mRNA upstream 198494 19747426 ~ 19762294 (-) True AMCG00003336
TU178860 other downstream 3957 19543648 ~ 19544684 (-) False AMCG00003320
TU178404 other downstream 2800210 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 4431124 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4874221 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 6118317 13427294 ~ 13430324 (-) False AMCG00003164
TU178862 other upstream 3939 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 6511 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 16463 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 17981 19566913 ~ 19569615 (-) False AMCG00003320
TU179004 other upstream 265210 19814142 ~ 19876762 (-) False AMCG00003337

Expression Profile