RNA id: TU179095


Basic Information

Item Value
RNA id TU179095
length 4004
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G142376
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20595470 ~ 20599545 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGGGTAACAACAAAAATAGCTCATGGATGCACAATTATTGGAGGCCACATAACACCGAGAACTATGGTTCTGAAAACTATGATAATTAGCAGTTAATTTGTCCTTATTCACAAATTTTGCATTTCCTCATGTTTGGAACACCATCGGTTAGGGAGACTAAGACCATTATTCCCAGGGTACTGAGTGCTGCTGTCCGACAGCAAGTACAGGAAAACTGAGCACTTTGACATTGGGAGAGTTCAGGACGGAGAGCAGTGTGCTTACATCCAATTAACAGCCTCAAGATATTCAACTGAAAGAAGTGCATGTTTTCCAACCTTGTTCTTGGAAAGCCCCAATCTTTAGGCCACTCCTACATGTGCAATTTTATAATGATTGGGAACACATTAGTCATTAAAGcaagaaatgttttcatttaaaaaactctGTTGCTTGAGAGCTTTCAGGTGTTTGGTCTAAATGACGTCTAAATTAGAAATCCAACAAAATAAGCCCTGTTTAATTGATCAGAGTTCAATCTTCCAAAGTATTTTTTGAATTGATGCTTAAAGGGTAACCTATGAATCTGCTTTATTAGGGCTCTCCTGAACCAGGGCTGGAAACCCCTGCTCTTGAATCTATGGTGTAGGaacaggagaaacaaaaaaataataataataacttaacaGCATGTCCAattggaataaaatatttttgagagGTTTCATAATGGATATGAAAAGGACCTTGGACTTTTATTTAAGAGGCAGATATGTGACCTTAACAGTTGAGCATCATCTGTCCTCACAGACTAAATTAATCCTTTTGACATGACATAGTACAAGCTCTAACACCCctagcgcacacacacaaaacaaaataccccccaaaaaaatcacaattgcataaaaaaaatcagaaatataatttaacatcTAACACCCTTTTGTTCAAGTTTAAACAGTCCCATTGTTCTTTAGTCGTCAACAGAAATCAAATCGGAGCAAAGTTAATTGTCAGGACTGGTGAATGCGATTGTTTCGTCCTGTGCAGTACGAGTGGAGCTGGCAGTGTGTGAGGCAAGCGAGCCACTGTGACAGTGAGAGAATGTGTCTCTAAATCTGAAGGGTTTGCAGAAACCCTGACAGTGTTGAGAGtgtttaatgaaataatgatttatGCTACAGCgtaaaacactttttgtttgtttataatcaCTGAGAGGAAATGAGATCTCAACAAATTGAGCATGTGTGTTAGACCCTCCCTCACCCTCCACCCCACCAATCTCCATCTTACCATCTGTCCATGGAACCTAAAGCTTACCATAAACTCACACCCTACTaaaggaacagaaaaacaagtacAGCAGTTATCAATTCATTTCCCTCACTTGAAGCTGCTTAAGATCTTTTGAATGTTGTATTCAATACAAAGAGCAATGGTTGTGCATGTGTGCTTTATATAGAATGAACAACATGCACTCATTTCTATGAGGGAGGTACAGTACTCAGTGTTCTCAATGTATATTCCAATTATTATCATTGtcaatgatgataataataataataaaaataaagatgcattCTACACAAATATCACTGGCACTTCAACAGTTTGTATTACGAGGGAACAGACCAAACCAGATGACCAACATTATCtgcaataaaatgttgaaaCCATGCACTACAGCACTGTTACAAATCACTTGGGAGATTCCCATAGTCATTTCTTTGAATTATTTCCATCACAGCATTATCAGTACcagtctttgtattttattatacttaCTTACCAGCATTGAAATCTGTTGAACAAACCTTGCTTCAATCTGTAGAAAGGGCAATTTAAACTACAGCTCACCCCACTTTTTTGTCTCTGATTAAATATTTGCTCAGTTGCTATTCATCAGTGTAACTCACACAGAATCTTGTATTAGTGGGAACTATAGAAAGCATTATCAACTGGCATGACAAAAGAGCTGTGTATAAGAGTATCACATGGGATACACATGCAAACCCCTTATTTAAATTggtttcacacattttttgtttcaatgtttcCTTGCCAATAGCAGATTTGattgaaaaatctaaaaatatatatatatatatatatatatataatcttaacaAGTAACATTAGGCAAACTTGTATGTAAGGAAATAAATTGTAAGCACTATCATTCAAAATGGTAGCTTACTGGAGGTGAGTTATGTCCACCTATGAGATTGTGCTATATTCATCACTTACAAATCTCACACGTACACCAAAAGTACTGTCTCAGGCTAGTGTATtacataaacaaaccaaaaataagtGAATAGTCATTTAGAACTACTTTAATATTCATGCTGTcaaaacaatttcaatataaatcagtcaaagaacaaaaaacacacttgaTTCCGAGACAGATTTGAAAGGGTATGTGAACCGCAGACATTCAATTTGACATCTGGACTTTCTGTTCACTAAACTGCTTGGTTTTGGATTAGTTACACCATATATTAAAAGTTCATAGATGCTATCCACCAACAAATGTGTGAACATCTCTTGTTAGAAACAAAGTCCAATGCAGTGCAAAAGAGGACAACACAAATGTGTCATTCTAGTGAATGTGTGGTCAATATTGGAAATTTAGGGAATGATGTTCAAAATGCAATTAGATTCCATACATGATGAATTGCCACCAGGAGGCACTGTGTTCTAAAGTGAGGATTAACACAGCTGCCTAGCCCCTTCCCTGCCATCAACAGCTTCAGAAGGTCTGAGATTCCCATCTCCACCAAACCACTGTAGAGATGTCTGGTGTACTTGCAGCATTCTCCTAATCCGAAAAAATTCAGTCTATGATATTAAGGTGACCCACCCTGCTCCCAGCTTCACACTGGGTTTTACATATTGCTTTAAAGTATTTTGCATGTCCAAATTCTCTGGTTCCTGAAGTAccatacatatttttgaattaACTGCTTATTTAAAAGGTAGGAGACCTTAAACGTAAGTTTGATCTGTTATGGTCTGAAGCATCCATTTGGTCAGTCCTACAGCTTTAAATTTCTAATgggcagattttattttcttccctgtAAACAATCAGTGGTTGTCAACCCTGATCTGGAGGTACCCCTGCATCTGCAGGTTTATGCTCATGTTCATATCTAATTTAGTTAATTACTGTCAACTGCAATTATAGAACCGTAGAGCTCAGCTGAGAGAAAAATCAAGAGACAGGAACTCATGGACTAGAGTGGAAAACCACTGATTTAAAGCAAGTTCTCTTATGAAAAAGTTGAAACATGGAAGTAAGCATATAATTATAACACCTGTAAATGATTAAATCTGACATACTTGCACCTCATGcataatagtttaattaaaaacttgcAGGAACCAAAGAGTTTAAACAAAAggatttttcaaataatgttgAAAGCTGCCATTCTTGATCCCAGAGTAGAACTGACAAGAAGATTACAGAGAATattgaaagatttatttttgcagtaaaAAAGGTAATGCTACTTTGAATGCCATGTGATCTTTAAAGCacattctatacattttttttttccactgaccttgcttttttctgcttttaaggGATTTAATCCATATGATGCAGAGACGTTTAATTGTTCACCTGTAGTAGATGGAGAAGTACCACTGGTTGCTTTCAATATGCacaacatgcatacatataagATATTCAGTCTCCCCCTTTCTCACTTTTGGGCACTCAACACTAACGGTTCAAGGGTAGACCTGGCTTGCTGGTCATTATACCTTGTGATTTTACGGTTTGGATAAAATAAGATGAGTACATTATACTGGAGTAGAACAAAAGCTTCAGCCAACAAATGCAGCTAAGCTTTGTAGCAGTGTATCTATTGATAAGGAAAAGTGGAGATGTGGAACATCAGAAACATcagatgcagaaaaaaacacagactcAAACAGAATGCCCATTCCTCAATTTGTTGCAATACTATATCCCCAACCAccttcccccccacccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179072 lncRNA upstream 320854 20274333 ~ 20274616 (+) True G142354
TU179058 lncRNA upstream 466755 20128367 ~ 20128715 (+) True G142340
TU178921 lncRNA upstream 939315 19654366 ~ 19656155 (+) False AMCG00003324
TU178899 lncRNA upstream 962397 19618881 ~ 19633073 (+) True AMCG00003323
TU178895 lncRNA upstream 978903 19616261 ~ 19616567 (+) True G142205
TU179118 lncRNA downstream 44936 20644481 ~ 20644794 (+) True G142397
TU179134 lncRNA downstream 146000 20745545 ~ 20749364 (+) True G142412
TU179141 lncRNA downstream 167809 20767354 ~ 20771779 (+) True G142419
TU179142 lncRNA downstream 168479 20768024 ~ 20771779 (+) False G142419
TU179214 lncRNA downstream 504275 21103820 ~ 21143131 (+) True G142482
AMCG00003348 mRNA upstream 1970 20492359 ~ 20593500 (+) True AMCG00003348
AMCG00003349 mRNA upstream 186786 20403696 ~ 20408684 (+) True AMCG00003349
AMCG00003343 mRNA upstream 467914 20126144 ~ 20127556 (+) True AMCG00003343
AMCG00003340 mRNA upstream 617555 19955769 ~ 19977915 (+) True AMCG00003340
AMCG00003331 mRNA upstream 732829 19857380 ~ 19862641 (+) True AMCG00003331
AMCG00003351 mRNA downstream 160775 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003359 mRNA downstream 552306 21151851 ~ 21177530 (+) True AMCG00003359
AMCG00003361 mRNA downstream 926092 21525637 ~ 21748601 (+) True AMCG00003361
AMCG00003363 mRNA downstream 1153801 21753346 ~ 21755934 (+) True AMCG00003363
AMCG00003370 mRNA downstream 1446768 22046313 ~ 22067314 (+) True AMCG00003370
TU178898 other upstream 962397 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 1058379 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 1903266 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 2916948 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 4036264 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile