RNA id: TU179126


Basic Information

Item Value
RNA id TU179126
length 385
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G142404
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20655063 ~ 20669631 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtatatagattatctatatctgtctatctgtatatatatatatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccagcatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatgactgcatgtagcaaggctACAAGGCTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179075 lncRNA downstream 279437 20375386 ~ 20375626 (-) True G142357
TU179066 lncRNA downstream 474040 20180795 ~ 20181023 (-) True G142348
TU178890 lncRNA downstream 1055949 19597329 ~ 19599114 (-) True G142200
TU178861 lncRNA downstream 1106131 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 1817578 18835540 ~ 18837485 (-) True G142090
TU179139 lncRNA upstream 88488 20758119 ~ 20758457 (-) True G142417
TU179140 lncRNA upstream 94913 20764544 ~ 20766330 (-) True G142418
TU179147 lncRNA upstream 97723 20767354 ~ 20767630 (-) True G142420
TU179148 lncRNA upstream 101092 20770723 ~ 20771795 (-) True G142421
TU179161 lncRNA upstream 140327 20809958 ~ 20810651 (-) True G142433
AMCG00003346 mRNA downstream 25467 20623403 ~ 20629596 (-) True AMCG00003346
AMCG00003347 mRNA downstream 51058 20601752 ~ 20604005 (-) True AMCG00003347
AMCG00003345 mRNA downstream 292477 20223823 ~ 20362586 (-) True AMCG00003345
AMCG00003344 mRNA downstream 489480 20159328 ~ 20165583 (-) True AMCG00003344
AMCG00003341 mRNA downstream 621474 20019858 ~ 20033589 (-) True AMCG00003341
AMCG00003350 mRNA upstream 106948 20776579 ~ 20796389 (-) True AMCG00003350
AMCG00003353 mRNA upstream 221120 20890751 ~ 20892570 (-) True AMCG00003353
AMCG00003354 mRNA upstream 238049 20907680 ~ 20912693 (-) True AMCG00003354
AMCG00003352 mRNA upstream 273125 20942756 ~ 20945804 (-) True AMCG00003352
AMCG00003355 mRNA upstream 322854 20992485 ~ 20996275 (-) True AMCG00003355
TU179004 other downstream 778301 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 1085448 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 1088476 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 1091785 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 1100951 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile