RNA id: TU179140


Basic Information

Item Value
RNA id TU179140
length 1749
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G142418
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20764544 ~ 20766330 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatcagcaggggatcaaatactttttcccccgcacacattatatatatatatgacagttTAACATGATCAAATGAGGCCCATGCACATCCAGAAGTATCACTTGATTAATGACCttgaattataaaacaaaaacccaacaaTAGGGGTCTTTCTATCTAGGAACAAAATCTCTAATGTGGTGTAGAAACTGTAAATTTTTTCTGCATAAAGTTTAGTATGGAGAGATTGAATGTCTAATGTACTAAAATGGATGTGAAACATGCAGAGTTCCATCGTGATAAATTCCAGTGATAAAACTGCAAAGAAGGGACACACTAGCCCAATATCCTAAACTCAAGACTGTTTCAGGCTTGCAGAGTGCCTATAaaccagatcttttattcaaagaTCCAACTAATTTGTTCAACACGTCTCACATTCTCTCTCAGTCTTTTTTTCAGAAAGGCAAAAACTTTAAACAAGGTTAATCATtctttctaattattttaaaatgtgtctaaacttaaagtaaatgaataagaataataatcttTAGTTAAACTGTAAAAAGTATAATACACTTCTATTCCTGTTCACTTAACATTACAGTGGATATATATACCCTTTCAAAATTCTATAGATATACTTATTTCAGACCGctttcaaacacaatattaagGCATATGTGATACATGTGAAAATCgtgttaaaatattcaaatcatCAAACTCTTCCGCTTACAATGTGAAATTCAGCTAAGTAAGTATTCTctgaaataacaataaattgTTGTAccataacatttatttctcttttttctcaTAAATGCTAAACTTAAAATAGCTTAAGCACCTAAGACAGTGAGGAAATCCACTGGATGCAAACTATAccgtttagtttgttttaattattttgctaaATATACCATGTCAGCTTTTCAAGTGCAAGCCTGTTGGCCGTTGCTCAATCTGGTCAGATTCTGAGAAAGTGACCGGTTTGGGCTCCCCCATTCAAATCTAAGTCTGTTCTGAAATAGCCAtcaaagcacacatttaaaGCCTTTTCAAAGTGTGTACACTGACATAAAATTTAACAGGACGAGCCACATTGCACGTATTGCAGGCACTTGGCATTGTTATGTTGTAACACAGCTATAGCAGACCAGCTGCAGAACAAGGGAAGGGTCCTGTACCACTATGGATttcagtatatacagtataaaaaacaaatggatgaTAGCGCTTGCCCATCAAACCTAATCAATAGGGTTTAAGACAgttcatataatttttttatcagGTTAAGACAATTGTTCCCCTGCCTTACTGAGGAGCCCTTGGTGTGACAGTCTAAACACCATGGCAGAAATGAAGAAGCTCCCAAAAAAGCCAAGCCCTATGGAAAATCTTAGCAGCCGCTCGttagacaaaaaagaaaatgaccaaGACTGAGCTGCAAAGGAACCAAGGCTGCATAGCAATATTTGACCACAGAGGCAGAATCGGTATTTGAACAAAGCACCAGCCACCCCTTGGCAGGACAGGGTGAGATAGTGAGAAAGAGCAAGAGGACTGCCACCCTGTCATCCATCCCTGTGGCCCCAGTGCTCTGGATAGGCAACACTCTATCATACGGAGAGACTGCGAGCCGTGGCAGCTGAGCCCTGTGCCCTCTGGATCACTGCCTGACACTTCTCGCATCTCAGCAGACGGTTGTTTTCAAACACGCCCTCGTTGCGGGGCACCCCATGGGCGCCATCAGGGAAGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179139 lncRNA downstream 6087 20758119 ~ 20758457 (-) True G142417
TU179128 lncRNA downstream 20940 20659612 ~ 20743604 (-) True G142406
TU179126 lncRNA downstream 94913 20655063 ~ 20669631 (-) True G142404
TU179075 lncRNA downstream 388918 20375386 ~ 20375626 (-) True G142357
TU179066 lncRNA downstream 583521 20180795 ~ 20181023 (-) True G142348
TU179147 lncRNA upstream 1024 20767354 ~ 20767630 (-) True G142420
TU179148 lncRNA upstream 4393 20770723 ~ 20771795 (-) True G142421
TU179161 lncRNA upstream 43628 20809958 ~ 20810651 (-) True G142433
TU179167 lncRNA upstream 46743 20813073 ~ 20813646 (-) True G142439
TU179168 lncRNA upstream 48569 20814899 ~ 20815198 (-) True G142440
AMCG00003346 mRNA downstream 134948 20623403 ~ 20629596 (-) True AMCG00003346
AMCG00003347 mRNA downstream 160539 20601752 ~ 20604005 (-) True AMCG00003347
AMCG00003345 mRNA downstream 401958 20223823 ~ 20362586 (-) True AMCG00003345
AMCG00003344 mRNA downstream 598961 20159328 ~ 20165583 (-) True AMCG00003344
AMCG00003341 mRNA downstream 730955 20019858 ~ 20033589 (-) True AMCG00003341
AMCG00003350 mRNA upstream 10249 20776579 ~ 20796389 (-) True AMCG00003350
AMCG00003353 mRNA upstream 124421 20890751 ~ 20892570 (-) True AMCG00003353
AMCG00003354 mRNA upstream 141350 20907680 ~ 20912693 (-) True AMCG00003354
AMCG00003352 mRNA upstream 176426 20942756 ~ 20945804 (-) True AMCG00003352
AMCG00003355 mRNA upstream 226155 20992485 ~ 20996275 (-) True AMCG00003355
TU179004 other downstream 887782 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 1194929 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 1197957 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 1201266 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 1210432 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile