RNA id: TU179161


Basic Information

Item Value
RNA id TU179161
length 694
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G142433
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20809958 ~ 20810651 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcaTAACAAAGTTCTATGAGTCAATCCATGTATATTCAGTATGCTCACTTACTGTCAAAACATCATGATGTTTATGCTCTTCCAAACAACCAAGTATAAGTCTCTTTCTCCTTAACCTAGTAAATGGTGATGGTCTTTATGCTATGGAATCTCCCTCAGCTAcaaatactttgcattagtatctgctggtctctgtttttttcttttttaaatggaattacacattataataattgaatacgaATACTAAACCATCAACATGTGCACATACCGGCAATACCTTGTACTGgacaaattatttagtttttgctaGGGTTAAGCAATTACCTAATTTTAGaaactgtttagtttgtttttgcccTGTGCCAGTGCTGAATGACACTCCTCCCCTGCGAAGGTTTCAGTGTCTCTTTCTCGTTTTGTTGCGGTTGTTCTACCGGTATGCTTATTGCTTTGCAagtctgaaaaagcatattctatccatctatctttctagtaatttaattctaattaaatcaatgtttattgacTGTATTTCATGTACAATTATCAATTGAATACACATATgcaacagttattattattattctgtctcttggTTGCAGTTATTGCTGtgcatgtctgaaaaataaaggcttattctgtattctagtacttttatatgtttattttgtcaaatttacattgattattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179148 lncRNA downstream 38163 20770723 ~ 20771795 (-) True G142421
TU179147 lncRNA downstream 42328 20767354 ~ 20767630 (-) True G142420
TU179140 lncRNA downstream 43628 20764544 ~ 20766330 (-) True G142418
TU179139 lncRNA downstream 51501 20758119 ~ 20758457 (-) True G142417
TU179128 lncRNA downstream 66354 20659612 ~ 20743604 (-) True G142406
TU179167 lncRNA upstream 2422 20813073 ~ 20813646 (-) True G142439
TU179168 lncRNA upstream 4248 20814899 ~ 20815198 (-) True G142440
TU179279 lncRNA upstream 365693 21176344 ~ 21179745 (-) True G142531
TU179280 lncRNA upstream 365693 21176344 ~ 21213391 (-) False G142531
TU179287 lncRNA upstream 436892 21247543 ~ 21248434 (-) True G142533
AMCG00003350 mRNA downstream 13569 20776579 ~ 20796389 (-) True AMCG00003350
AMCG00003346 mRNA downstream 180362 20623403 ~ 20629596 (-) True AMCG00003346
AMCG00003347 mRNA downstream 205953 20601752 ~ 20604005 (-) True AMCG00003347
AMCG00003345 mRNA downstream 447372 20223823 ~ 20362586 (-) True AMCG00003345
AMCG00003344 mRNA downstream 644375 20159328 ~ 20165583 (-) True AMCG00003344
AMCG00003353 mRNA upstream 80100 20890751 ~ 20892570 (-) True AMCG00003353
AMCG00003354 mRNA upstream 97029 20907680 ~ 20912693 (-) True AMCG00003354
AMCG00003352 mRNA upstream 132105 20942756 ~ 20945804 (-) True AMCG00003352
AMCG00003355 mRNA upstream 181834 20992485 ~ 20996275 (-) True AMCG00003355
AMCG00003356 mRNA upstream 214806 21025457 ~ 21043333 (-) True AMCG00003356
TU179004 other downstream 933196 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 1240343 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 1243371 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 1246680 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 1255846 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile