RNA id: TU179279


Basic Information

Item Value
RNA id TU179279
length 2330
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G142531
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21176344 ~ 21213391 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaactttaaaaatgattgaattATCAAATTTAATAGATAAACCTTCCATCTCCAGCACagttaataattgtaatttctgctcatttaaaaaaaaatcatgaataaacattgaaattacatttatactATCATAATAGTGCACTGTACACCAAGATCAAATTTACACCGATGTGTGTGGCCAGTATGAGGAATAAAGGAATAAACTCCCCCCAAAGAAACTTCCAAAGTAACAAGGATAACATTCTGCAATCCAAGAAGATCCAAGGGGTTTTAagtaataaaatcatatttaataacacatttttacagtGCATATTCAAACAGTCATCTTGTATCTttacaaacaatgaaaaaaatctaCCAACAGCAAAAACAGTAGAAATCCATCAGTGTGAGAAACAATGATGACTTTATAGCAAAGGTCATAAAACAGGGAAGGACACAAACTGAACTAAATTAAGAATTCTGATGCATTAAGGaccaaaatattttgaaaattaatatCTCAGTTTATTTACTCATGTCAGGAGGaactcaaaataaaaacctgataCTCACAAAAGGCGTTTTACTTCAGTTTATTATGATGCATCACAAGGATTTTCAAATTAAGGTAACTATGCCATCAGCTGGCAACAACTGTGTATTGCAGAAAAGctacatcaaaaataaaaattcttaAGTTTCCATTAAAAGCACAAAATTAGCCAGACTAATCAGGCACCCACAGTGACCGAGCTTGAGAACATGGTCTGATACTGGCAGGCATTGATTCTGAAGATATTTTACTCCTatgtacagagagagaatgATTGTGCATAAAAAAAGAGGCATGTAGAGTCAATCACTTCTTCAACCAAATAAAGCACATCAATTTATTCAGCATAATATATTCCTAAGGCCCTGGGAAATTCAGAGGAACAGTCTAAAACTGCCATTTTTGTGTTagttattaagttattattcCAGTTGAAACCGGTAAGAGACTTTTGAGCACAATAACCATAACTGCTTAAATATGAAACCTACTTCAATAATTGGATACCATAAACACCATTCTATAAATTATACGCttaaatatacagaaatgtaatgtcctccaaaaacaaaataatacacacattatatgatatatatatatatatatatacacacattatatgatatatatatatatatatatatacacacacacacacacacacacacacacatatacttttttccccccatggaATAGATTCtttttttgtccattattttttttggtcagCATTATGAGGCAATATCTTAACTATCCTATCCTAATAGGATATTTCTAATAAGCTGGTAGTGCACAGTTTACCAAATAATTATGCTTTCATACTCCACTTCATTGGAATTCACTGCTTTAGGTTTTGATCACTAGGTCATTGACATTTTACAGGGCCTTGTGTATTACTGCTAGGGAAACTCTGATTATCATGTTAAGTGCACTTGGATATAGTCATATGAAGTCCacaataatgcaaaaatgattgGTTGGTTGACAGAACAAAATAGTTTTGAGCAGCTGTTTGGGGTTAAGGTTAATCAGCTACTCAGAACTGTTCAGCAAGGAAAAGGCATTTGCTTCAGGGGCATTGCACTTTGCTTTGCACCTcatgtaaaaactgaaaaatatattttcggTCTAATGATTCAAATTAACTTCTGAAAGAATGCAGTGTCTTCTGGATTCTGACTCAACCTAGCTCTAAGTTAATGAATTGGTCTAATTAGGTGATTTACTAGATCCAATTAATACTCTCTCCAGGCTGCaaataaaccacattttaaCTGTAATAGACCTTAATACAAAGTGATTTTATAACTCGCACAGCAGACAGTATTTGGGGAAAATCTGAAATTTAAGAGGAAAATCCTTCAGCCATCAAGGACCAGAGTTCCCTTGACTGAACAAGTAACTGGATTGCTAAATGGTTAAAATCTAAATGGTTGTTACTATGGGAATGTTTTTCCTCATGCTTATTAGATTGACCTTTTTTGAAAAGACTGGGGCTCTCTAGGACCAAGATTGAATGGAGTGAAGGAGATTGCATTAGTTAGTCAAGGTGATGGTGACAAGAAGCTGTAGACTAGAGGTTCCTTACTTATCTGTTGGCATCAGTGTTGGACAGAGAGCATTAGTGAGAGAAACCTGTAGTTTCTGCTGTGGGCACCTCCTCGGTTCACTTAGCGACTCTGCGGAGCTCAGTGAGTAGCCAAATGGCTAGGGTGAGCAGTGCCAGGGAGCCAGACTGGTGAGTGGCTGCCAGGGGTGTGGGCACATACATCAGCAGGGTACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179168 lncRNA downstream 361146 20814899 ~ 20815198 (-) True G142440
TU179167 lncRNA downstream 362698 20813073 ~ 20813646 (-) True G142439
TU179161 lncRNA downstream 365693 20809958 ~ 20810651 (-) True G142433
TU179148 lncRNA downstream 404549 20770723 ~ 20771795 (-) True G142421
TU179147 lncRNA downstream 408714 20767354 ~ 20767630 (-) True G142420
TU179287 lncRNA upstream 67798 21247543 ~ 21248434 (-) True G142533
TU179305 lncRNA upstream 271930 21451675 ~ 21459233 (-) True G142549
TU179329 lncRNA upstream 582267 21762012 ~ 21762258 (-) True G142570
TU179460 lncRNA upstream 887208 22066953 ~ 22069982 (-) True G142661
TU179463 lncRNA upstream 905173 22084918 ~ 22085191 (-) True G142663
AMCG00003357 mRNA downstream 30030 21143389 ~ 21146314 (-) True AMCG00003357
AMCG00003358 mRNA downstream 40964 21134071 ~ 21135380 (-) True AMCG00003358
AMCG00003356 mRNA downstream 133011 21025457 ~ 21043333 (-) True AMCG00003356
AMCG00003355 mRNA downstream 180069 20992485 ~ 20996275 (-) True AMCG00003355
AMCG00003352 mRNA downstream 230540 20942756 ~ 20945804 (-) True AMCG00003352
AMCG00003360 mRNA upstream 18847 21198592 ~ 21251895 (-) True AMCG00003360
AMCG00003364 mRNA upstream 345327 21525072 ~ 21725891 (-) True AMCG00003364
AMCG00003362 mRNA upstream 563544 21743289 ~ 21753048 (-) True AMCG00003362
AMCG00003368 mRNA upstream 587215 21766960 ~ 21775448 (-) True AMCG00003368
AMCG00003369 mRNA upstream 621285 21801030 ~ 21814784 (-) True AMCG00003369
TU179004 other downstream 1299582 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 1606729 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 1609757 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 1613066 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 1622232 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile