RNA id: TU179340


Basic Information

Item Value
RNA id TU179340
length 4931
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G142580
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21801019 ~ 21806660 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTACAGACACAGGGTTGAAtaaagtttattaaatattgcataatACTGAATTCAGCACAGCAGTAAATAGATGctcttttttaattcattttgtgaaaTCATAAAGCACTGCAattagaagaaaacaacacaaaatgctgCATGATGTGTTTATAATGGGGTGCAGCATACAGAAAAtggtaaataaaaatgtattagaagCATTATGTTATATACAGTCAGCATACTGTAAACATTTCCATTAGATATATTAAAACTTGTGTTACGCTGCTAGGTGTGAGTAATATACTTTTTGGGGTATTCTTAAATTAGATAAAAAcaggcaaaaagaaaaatgatgcaAAATCAATAAACCATACATAATATGAGGACTACGGGGAACATGGTATCatgatatttaacattttttttagtgcatgtgtttttctgtgctaatacttgttttttatgttgtgtgCTTTGCAATCCTCCAGGTGAATAAATGGGTAAATTCAAAGAGCTCCATAACTGCCTTCTCTTTTTCTGTCACTTAAATTCCTctctattaaattattttctatacagGATAAGTACACATTctgtacaaaatcaaatatacatatttacaatcatACTTTTGCAGTTTTATAGTTCCATTCTTGTAGAAAGTCCACaacttgaaatgtgttttttctttttatgttttcaatatcCTGAAATCTGAAACTTCAAAATTTGCAAAACGAAATCTGAGTGTTTCAAACCCCAAGTTAAATATCTGAATGAACTAGAGGTCTGAACCTTGAAATCTGAGGCTgacactcaaaaacaaaaactgacagTCTGGTAGTTTTAACCAAGAGGGGGAAATAATCAGTTACTGTCTGGCCAATTTAAAAGATTGGAGAAGGGCTGTATTAtttgttgcaaaataaatacattgatgttGACATGTTTCCCATCAGGCATTATGGGATACTTTTGCATTTGTACTCAAGATTTCATCAACCAGCTCTAGTGTCTGACACCTTTCATATGTCATCTTGCGACTTTTGAAGTATCAGATTtagatttcattattatttgttttgttaatccAATgatctttgttttaaactttatttagattttaacaGGAATCCAACTCCTCTGAAGGTTTCCCTCTATCCACAAACAACCTCTGGGAACTGTGCTTTTCCATCTCACACTGATGAAGTTTGTCATGGCAGCTCctgcattttaatagtttttttttgttaaataaattctCTCTAAAAAAGTTATCAGCATAAAAAtaggtgtttatttatatttttaatgtcactttgtttttcttttcaactcTTAAATATGTTACTTATGTGACAAGAACAGCAGTCTAAACCATTAAAGAATGGTCTTAGCATTACAGAAGACATATTCAATCTAAAAATACTATAAGGAAGAATCAAGGGTTTCAGGCAAAGGATTAGGGGTGGGGGAATGCAGGTGTTTTCACTGGCAGTATTTGTTAAAAGCTGGTGTTGTAATGAAAGTATCCTTTCCTGTTTGTACattcttctttttcctttcaataGACCCTTCATCTTCAGCTTTAATCAGGAAAGATTTTCCACCGTTGCTCTGTTTGGAGATCTTACAATAGAAGTGGATGGCTagtccaaacaaacaaacaaacaatatctcCAGATTAAACCTGAATGACCAACACACAAAATTCCATCTTTAATGCTCCTCTTTTCATCCTACGGGTATGATGTCATCTGCTGACTACTGCAATGTCTCCAAGAAGAGGTTATGAGCCCTTAAGAAGTTAACCAAAATCCTTGATGTCAGCTTTCAGTGATATGAGCAGAACATGCATCTGGTGAAAATGAATTTCAACAAATAAGTTTTCAGTCTTCTGATGTGTTTCATGGCTGCAATTAAACCACTGAAGGTGGCATCttaatctgttttaatgtgCAGCCATATATCtgcacaatacaattaattttggTTATATAAAATGCTTTCCTCCTTGTAAGGGAAAAATATGAAGATTTGGAGTATAAGTCTACTTAGACACTTTTTTCCCCTATGGTTACTTCTAAGAAATATcttttcatatattcatatacattttgtcaAACTATCTTCACTTCAGACTCAACTGGCAGTCTTGTGACCTGCACACAGTCCTACAGTATCACAAGGTCTGACAAAAActcgttttgttgttgttgaaaggTGCAAAAGGCAGTCTCATTTAGTTTGCACAAAGTCAAGCCAGTGTAGCAAGCAAAGTGATATTGTGTAACAGACAGAAAAGTTTAGGCCATAAATCCTCAGCTGCCTGTTTTTTGTGATTGCAGTCTGGCACATCATCTGAAACAGAGAAAATGATCGCACTTCTCACATGAACCTCTTACCATATATTCACATACCTCACACATTTTTACTTCGCTCGCCAGCTCAACAGTTAAGAAAGGTGTAttcatataacatttttttttctttttcttttttctttcaaaaagtAATGGTAGTTAACAGGCTGCTGGGGGATGCTGCTTATTATATTAGTGTCCATTTAGAAGAGCAGTGTTTACAAGTGAAGAGGCTTCACATAGTTTCCAGTTCATCCTCATTCTGTGGCACGTAACTGTACAGGGCTTGGAAGCTAGAGGTTAAGACACACTATACTTAGAATACACAACATTCAAGTTTCCTGTCACAATCTGTTTAAATCCTTCAtttttacaataacaaatatattaccAAGCAGTGTGTAACCACCATTGATTACAAATCTTcaatatactgtacaaaatTCAACCTATATGAAAAGAACACAATCTCCTTGGCTCATTCAAGTACAGCATCTAATACATTTGTGGAGTATACTGGATTTGACATCAGGTATTGTAATCATTAAGCTTAATATGTGGGGACTTcattaaagtcttcaaaatcatgaaaggcatttgaccacatcaaaccagaggagcttttccacatCTGcaagggacacacggacccggggacatgaatggaaactgggcttcaaggcattcaagacagaaaacgggagacactgcttcacacagagagtcatgacaatctgaaacaaactccccagcgatgtggttgaagcccacaatttgggaacattaaaaaatagaatggataggatccttggatcacttagttattaatggacaccaaatgagcatgatggggtgaatggcctcctctcgtttgtaaactttctaatgttcttaacAAAATGCCAGAAAAGTATGccaatatttgtttgtattcttaGGCTAGgtgtaaatcaaaacattaattcacCAGCAAATAGCAATCTTAACCCAgtacttttttaatgtgtggaAGAAAGAATTCTATGGCAAAACCAAAAGTTGCCAGTGTTTAATTTGCCTTTAACAggtgtataaaacatttaatttaatccccATATAAATCCATAATTGAGATTAATCCATTGCAGGAAAATGCAATCACATACATTTCAACTGACATTaaatccttatttatttattgtaattaatttgccCCCACTCAGCCACTTGGCAGCCTTTCATGTAAACAGACATTAATATTTCTGCTGAAGGAGGGAGAATTAAGACCAATATCTTTTGATTCTGACCAATTCTATCATTTTAGGAATtatcaaataatgtaatttaatgattCCCTGCTTTCTCTGCTGCAGAAGCCGGTTGTTGAAATAGTCCATGCCAAGTTAAAGATTCTAAGCATTGGCAAACATATTCAGACAGCAACTTCTGTCTTAAGAAGAAAAATGCCCAAAAAAGTTTAGTGCGATGTCAATGTCCTTCAGTGAGcctgaaaataatgtgtaagGAATTGTGGAAGTCATACTCACACTTCACAGCTGGTCTGGCTCTGATCAGGGCTGCTCCCACGCTGCTGAGCCTGGGGTTGCTGAGAAATGATGAAAGATTGTTTACTGTGATTAGAAGGCAGTCTATGGGTAGAGTCAAGCGGGTGTGAAAGGGTGCTGCAGTAATGGACGGACTTTTCTGCAATATTCATGATCTCATTGCAGACTGCATCCTGGGGAGCAGACATGGCACACACATACGGAGAGAAGACGAAGTACCGGCCGAAGTGTGTTGTCCCCCCACCCATGAAGACAGTCAGCAAGAAAGAGATATGAAGTTTGGGGCAGGTTAGAAGAAGGAGGAAGAACATTCCAGACGCATCATTTCAGTCCAGTAAGTAATAACAccgggagggggagggggtccGTTAAAACCAGGGTGGATGAAGGAGGAATCCATAGGTAAGCATGGAAAACAGGCAAGAATAAGATTAAGTGCACATAAAATCATCAATGAAACTGAAAAGTGCAGCACCACACCACACAATGACTGAGCAATCAGGGAGTTAAACAGATGCAGTTAAGGCTCCTGTTGACTGATTGAGGACATGCAGTCAGTAGAGTGGGTTATTAATCAGCAAAGCGAAATAGACACTGATACATTACAGCCAGTTTTCCCCACACTGCTGGAGCGCAACTGAGATAAGGTTTTATAGAAGCTTTGCAGTCAGTTAAAATCAGTAAAAagttgcattgcattttatatcGGAGGACTGAGGCATGATGCAGGTACACTATGGTACACTTAACATTCAGCTGTTCACTGTCTTTCATCACTTAtggtacaaaaacaaatgttctacACAAATATCACAACTCAAATTGACTACAGTGTATTGTCACTGTAAAGCAGTTATATCTACTATTAGAATGCTTTAGATATGTTCGAAACATTATATCTATTATCTGCattattagtttgtttctgtaaaaaatGTGCTTGATGCTTTATAGTATTAGGATACTTGGATCCATATTTACTCAGCATTTGCCGCAAACAATTTCCTTTGAAATCAGAAAATTGAGGGAACTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179331 lncRNA upstream 34475 21766341 ~ 21766544 (+) True G142572
TU179313 lncRNA upstream 141241 21574114 ~ 21659778 (+) True G142556
TU179214 lncRNA upstream 657888 21103820 ~ 21143131 (+) True G142482
TU179141 lncRNA upstream 1029240 20767354 ~ 20771779 (+) True G142419
TU179142 lncRNA upstream 1029240 20768024 ~ 20771779 (+) False G142419
TU179384 lncRNA downstream 184852 21991512 ~ 21994674 (+) False G142620
TU179383 lncRNA downstream 185754 21992414 ~ 21994674 (+) True G142620
TU179464 lncRNA downstream 285041 22091701 ~ 22094748 (+) True G142664
TU179494 lncRNA downstream 842280 22648940 ~ 22706530 (+) True G142690
TU179529 lncRNA downstream 994192 22800852 ~ 22801060 (+) True G142722
AMCG00003363 mRNA upstream 45085 21753346 ~ 21755934 (+) True AMCG00003363
AMCG00003361 mRNA upstream 52418 21525637 ~ 21748601 (+) True AMCG00003361
AMCG00003359 mRNA upstream 623489 21151851 ~ 21177530 (+) True AMCG00003359
AMCG00003351 mRNA upstream 1036334 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003348 mRNA upstream 1207519 20492359 ~ 20593500 (+) True AMCG00003348
AMCG00003370 mRNA downstream 239653 22046313 ~ 22067314 (+) True AMCG00003370
AMCG00003371 mRNA downstream 328241 22134901 ~ 22144437 (+) True AMCG00003371
AMCG00003372 mRNA downstream 517172 22323832 ~ 22487911 (+) True AMCG00003372
AMCG00003374 mRNA downstream 905232 22711892 ~ 22716708 (+) True AMCG00003374
TU178898 other upstream 2167946 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 2263928 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 3108815 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 4122497 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 5241813 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile