RNA id: TU179384


Basic Information

Item Value
RNA id TU179384
length 2114
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G142620
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21991512 ~ 21994674 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaCTTGACTACactttacaaattaataataataaaaaaatcatacaatttATAAATCCATAAAgttttcacttttattattcCAGTTACTGTTTTGCAGAAGGAAtgcagaaaattaaataataattttacacacttttttttggttACTAATGTTTGTGTTGCTCTGGATTTAAAACCAAGACTATTTCCATTGACATAGTGTATATTTTCTCAAATACACTGTAGAAACCTGTACATCACTAAGATAAAACACACTGACTGGTCTCACTTACAGATCATCAGAAATAACTCCACACATTATTAAGAGCAGCTGCTCATGCAGATAATTTATTGTGTGCTactgtttttataaaataattgaggAGTTAACATGCATGCTTGTTTCAGacattatgtacattttgtgcATCAAGAGCAAATAAGAGATGAATTTGGcgaaatataaaatgattcaATTTGTGTTCCAGGGgatgagagaaataaataagttagtaaaaaaaaaaagtatatgaaaaaatattaaatacagggGAGCTCAGTACAGTTAGTTAGCTGCTTCTGGACACAtccatttataaacattttacatttggacatttaatttaatctaacCAAGCATtttagttattgttattttgtacatGCAATCTCTGGTAGTACACTTgcatttgattgttttacaCAACCTGactgtattgtgtttgtgttagtgtgtgtatatatatatatatatatatataatattatatacatatacatacatatacatacatacatacatacatatacacacacacacacactactggtcaaaagttttagaacacctcaaaaGCAGACTGTGCATTTACCTCCTGGGCTCGgaatgacggcgggcgacacagaaactgtaaatcagaggtgtttgagaatgaaacacgctggtagccaagagaataaacTTTCAAATGACATGCagattgtaggaatacagtgtaacttctatgcacaggagctgcgcgtaacactgccaaataatgcttaagagggtgtatatacacagtatataactctgaaatgtacattatttttcagtttttggtaacctaaacttttatttttaccctctgtcagtttaccacttacctttgtaccatttcaggttattcactggtcttgaactgcttaaatttcaataaacaattgaaaaatgtgGGTGTTCTACAACTTTTGACTGgcagtacatatatatgtgagtatatgtatatatacacatacatacacatatacatacctacaaacacacacacatctcatttcacttttttcttttaaagacaatttccatcaataaataaaggtttaGCATTTAgcaacttatttttaaatgtgctaaaaaaaaaatccacttttACCAATGTTAGGATGACATCAATGAGAGTGAAATTCAACCCATTGCCAGTCTCTGATCCAGTTCCACCACGGTTCACCTTCACATgctcaaaaatatatttttccctctCTTACACCAGCTGGATTTGTAGTTGGATGTCAGCTTAATTTCTTTTACAAGTTCTGCATGTTGCAAAAAGCAATCCACAGTGCTTGTAGATTCCTTGTCATTTGAGCTAAAGCCTCTGTATTAGCATATACcataatttaaatttagacACGTGGCCAAAAAGAGAATTGGTGTAGTCACTGAGCATTGTTGTTGCCAGTTCCATTGTTTTCAATGGCATTGGTAGGGCTTATCGTATGAATACCATCTTGCTGTAGGGTGTCTCTCCGTGGAGGCATTCTCTCGTTGATTCTGTCTAAGCCTTTCGCCTCTTCAAAACTGCAGATTTTATGTTGTGGCGAGAATCCTCGGATCgcttaacaaaatgcaaattggaTGAGTGAGTGATGGAAATACAGTTGGAGGAGGGGATTGGGGTAGAGGGAACAGTAGGATGGCAAACTAAAACATATGAACAAGGTTAACCTGTATCAGTGCTGATAGATTACCTAAACAACTGTCATATTGAGTTAATCTTTCTGTAaacacacagattttttttttttgtgtgtgtatatatttttatattttatgcacGGATGTGCCTGAATGATATAAAGGAAACATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179340 lncRNA upstream 184852 21801019 ~ 21806660 (+) True G142580
TU179331 lncRNA upstream 224968 21766341 ~ 21766544 (+) True G142572
TU179313 lncRNA upstream 331734 21574114 ~ 21659778 (+) True G142556
TU179214 lncRNA upstream 848381 21103820 ~ 21143131 (+) True G142482
TU179141 lncRNA upstream 1219733 20767354 ~ 20771779 (+) True G142419
TU179464 lncRNA downstream 97027 22091701 ~ 22094748 (+) True G142664
TU179494 lncRNA downstream 654266 22648940 ~ 22706530 (+) True G142690
TU179529 lncRNA downstream 806178 22800852 ~ 22801060 (+) True G142722
TU179531 lncRNA downstream 833427 22828101 ~ 22828463 (+) True G142724
TU179534 lncRNA downstream 899174 22893848 ~ 22894101 (+) True G142727
AMCG00003363 mRNA upstream 235578 21753346 ~ 21755934 (+) True AMCG00003363
AMCG00003361 mRNA upstream 242911 21525637 ~ 21748601 (+) True AMCG00003361
AMCG00003359 mRNA upstream 813982 21151851 ~ 21177530 (+) True AMCG00003359
AMCG00003351 mRNA upstream 1226827 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003348 mRNA upstream 1398012 20492359 ~ 20593500 (+) True AMCG00003348
AMCG00003370 mRNA downstream 51639 22046313 ~ 22067314 (+) True AMCG00003370
AMCG00003371 mRNA downstream 140227 22134901 ~ 22144437 (+) True AMCG00003371
AMCG00003372 mRNA downstream 329158 22323832 ~ 22487911 (+) True AMCG00003372
AMCG00003374 mRNA downstream 717218 22711892 ~ 22716708 (+) True AMCG00003374
TU178898 other upstream 2358439 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 2454421 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 3299308 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 4312990 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 5432306 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile