RNA id: TU179466


Basic Information

Item Value
RNA id TU179466
length 230
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G142665
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 22091701 ~ 22094628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaggcaacaaaggagtggctcaagaagaagcacattaaggtcctggagtggccttgccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcttcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacCTCTGACCTCTGT

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179463 lncRNA downstream 6510 22084918 ~ 22085191 (-) True G142663
TU179460 lncRNA downstream 21719 22066953 ~ 22069982 (-) True G142661
TU179329 lncRNA downstream 329443 21762012 ~ 21762258 (-) True G142570
TU179305 lncRNA downstream 632468 21451675 ~ 21459233 (-) True G142549
TU179287 lncRNA downstream 843267 21247543 ~ 21248434 (-) True G142533
TU179515 lncRNA upstream 607954 22702582 ~ 22706511 (-) True G142709
TU179532 lncRNA upstream 733444 22828072 ~ 22828460 (-) True G142725
AMCG00003367 mRNA downstream 71687 21994244 ~ 22020014 (-) True AMCG00003367
AMCG00003365 mRNA downstream 101281 21968705 ~ 21990420 (-) True AMCG00003365
AMCG00003366 mRNA downstream 225116 21818186 ~ 21866585 (-) True AMCG00003366
AMCG00003369 mRNA downstream 276917 21801030 ~ 21814784 (-) True AMCG00003369
AMCG00003368 mRNA downstream 316253 21766960 ~ 21775448 (-) True AMCG00003368
AMCG00003373 mRNA upstream 9499 22104127 ~ 22108082 (-) True AMCG00003373
AMCG00003375 mRNA upstream 737561 22832189 ~ 22833510 (-) True AMCG00003375
AMCG00003377 mRNA upstream 885872 22980500 ~ 22985638 (-) True AMCG00003377
AMCG00003376 mRNA upstream 891044 22985672 ~ 22986067 (-) True AMCG00003376
TU179004 other downstream 2214939 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 2522086 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 2525114 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 2528423 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 2537589 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile