RNA id: TU179532


Basic Information

Item Value
RNA id TU179532
length 389
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G142725
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 22828072 ~ 22828460 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggcagccagtgaagagaagccaatactcgagtgatgtgttcatgtttttttgtttttgttaggattcttgcagcagcattttggactaactgaagtgcagaaatagctctgtttgtgctgcctgacagaatggcattacagtaatccaatctagatgtaacaaatgcgtgtatcaatttctcagtgtcctgtaacgagaggaattgtcttagtctagcaatgtttctaagctggaggaaggaagatctcgacacattctgaatgtgtgattcaaaagatagattatgatcacagatgacacccaggtttcatgccatctccttagggaagaaattaaagttatcattactcagttttgttagtgcatgatgaacagttcgttttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179515 lncRNA downstream 121561 22702582 ~ 22706511 (-) True G142709
TU179466 lncRNA downstream 733444 22091701 ~ 22094628 (-) True G142665
TU179463 lncRNA downstream 742881 22084918 ~ 22085191 (-) True G142663
TU179460 lncRNA downstream 758090 22066953 ~ 22069982 (-) True G142661
TU179329 lncRNA downstream 1065814 21762012 ~ 21762258 (-) True G142570
AMCG00003373 mRNA downstream 719990 22104127 ~ 22108082 (-) True AMCG00003373
AMCG00003367 mRNA downstream 808058 21994244 ~ 22020014 (-) True AMCG00003367
AMCG00003365 mRNA downstream 837652 21968705 ~ 21990420 (-) True AMCG00003365
AMCG00003366 mRNA downstream 961487 21818186 ~ 21866585 (-) True AMCG00003366
AMCG00003369 mRNA downstream 1013288 21801030 ~ 21814784 (-) True AMCG00003369
AMCG00003375 mRNA upstream 3729 22832189 ~ 22833510 (-) True AMCG00003375
AMCG00003377 mRNA upstream 152040 22980500 ~ 22985638 (-) True AMCG00003377
AMCG00003376 mRNA upstream 157212 22985672 ~ 22986067 (-) True AMCG00003376
TU179004 other downstream 2951310 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 3258457 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 3261485 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 3264794 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 3273960 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile