RNA id: AMCG00003393


Basic Information

Item Value
RNA id AMCG00003393
length 2141
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00003393
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 619566 ~ 627690 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTATCTTCAGGAAGCCTACCTGTGGATGAAGCAGGTCCTAGCAATCATGGAAAAATCCCTGGTCCTCCTGCAAGATGTCACAGATGGATCATTGTATGAAGGAGTGGCCTATGGGACCTACACCACCAGATCACTCTTTCAGTACATTTTTCTGGTGCAGAGACACTTTGACATTGCCCACTTTGATCACCCTTGGCTTAAAAAGCACTTTGCCTTCTTATACAGGACTATCTTGCCAGGGTTTGAAAGAACTGTAGCCATTGCAGACTCCAACTACAACTGGTTCTATGGCCCAGAGAGTCAGCTGGTTTTCCTGGATAAATACGTAATCCGTAATGGCAGTGGCAACTGGCTTGCAGAGCTGATCCACAAGAACCGAGTGGTGGAGGGACCAGGACAGGCAGGAAAGGGACAGAGgtATGATTCAAATTTAAGTTCTACACCGCCTCCAGATTTTGGACAATCCAGAATGCATTTCTTTGAGGATTGGGGTGTTGTGACCTATGGAAGTGCGCTACCAGCAGGAATTAACAGAACATTCCTCTCCTTCAAATCTGGAAAACTGGGAGGTCGTGCAATATACGATATTGTACACCAGAAGAAGTACAAAGATTGGATAAATGGCTGGCGAAACTTTAATGCTGGCCATGAACACCCTGACCAGAACTCCTTTACATTTGCACCCAACGGTGTGCCTTTCATTACTGAAGCACTCTATGGACCAAAGTATACTTTTCTCAACAATGCTGTCATGTTTTCTCCTGCTGTTTCAGACAACTGTTTTGTACCGTGGGAAGGGCAACTGACAGAAAACTGCAATTCTAAATGGCTCAAATATAAACATGGAAGTGCTGCTGATACACAAGGAAGAGTACTCGCAGCTATAGAAAGCAATGGGTTAGTATTTATTcaaggagaaggaaaaggtgCCTACAATTCTGATCTGAAGATAAAGAGCTTCAAAAGGAACCTGCTGCTTCTACATCCACAGCTGTTGCTCTTGGTGGACCAAATCAACTTAGAGAAGGACAGTCCAATAGAACAAATGAGTAGCTATTTCCATAACACTGACTTGCCTTTTGAGGAAACTGTGATAGATGGTGTTCATGGAGCACTTATCAGGCACAGAGgtgaattatataaaatgttctgGATGGATGATACTGGCTATAGTGATAAAGGGGTCCTAGGATACAGAAGGTACCCTCCTGGATACCCTTATGATGGATCTAACTATGTGAATGTGACAATGCCTCTGAAAAACCCTATTACCAGAGGAGCTTACATCTTCTTCGGACCGGATGTGGATGTTCAGAGCTTCAGCATTCGTGGGGATGCTCAGCGAGTAGATATTTATTTGGCCACCAGTGAGCACACATACACGGTCTACCTCCTCACAGGGGAAGTTACCAGCAAGCCTCTCTTTGCCATGGTGCTCCTTGACCAGAAGAAAATTGTCTTTGAGAAGGAGGCAGGTGTCAAAGACAGTCCACCAGTTGAGGTAGAGGACCATGTTAGTCTAATTGAAGATCATCTCCAGCATATTAAACCTGTCTTCCAGCAGCTAGAGAAGCAAATCCTGGCTCATGTCCTCAATACTGATAACTTCAAGAAAACAGCTGAACGCCTCTTGCAATTTACTGACAAGAAGACGACAGAGGAAGTcattgaaaaaatgttttccctgtCAGGGAAGCAGAACAAGAATAAAAACTCAAAGAAAGGAAGCCTTAATGACAAACTGTCTGAAAGCCTTCCCGATATTTTCGCTCAGATTGAGGTGACGGGCATGAAGCACATGTATGAAGAAAACCTTGAGGAGGGGGACGCTCAGACTTTCGTGGATTATGGAGGTCTTCGTTATCTAAAAGGCAGGAAAGGTGGCTTTGTCAAAGGACGCAGTTATAAAGAAGTTCACATGATTGCCACTGTCAAAAGTACTGACCCCTCAATCTCTGCCTCCTACATAAGATTGTTCctaattttaaacattgctaCCTTCTTCATGTTGTTGGCTTTATTGCTGACTCGATTTCAGAAGACTCAAAGTCTACACACTCAGAGGTGTTTCTATGGAATTCTTCTCATTGACAGCTTCAtcctattgtgtttatattCCTCATGTTCACGAACACAGTGC

Function

GO: NA

KEGG:

id description
K01794 DSE; chondroitin-glucuronate 5-epimerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136 lncRNA downstream 3246 614569 ~ 616320 (-) True G112
TU135 lncRNA downstream 3929 614191 ~ 615637 (-) False G112
TU137 lncRNA downstream 3929 614470 ~ 615637 (-) False G112
TU125 lncRNA downstream 60832 519101 ~ 558734 (-) True G103
TU109 lncRNA downstream 133666 485584 ~ 485900 (-) True G89
TU150 lncRNA upstream 107076 734766 ~ 769986 (-) True G122
TU205 lncRNA upstream 317548 945238 ~ 957196 (-) True AMCG00003400
TU225 lncRNA upstream 405970 1033660 ~ 1035682 (-) True G188
TU251 lncRNA upstream 514548 1142238 ~ 1158563 (-) True G212
TU305 lncRNA upstream 960127 1587817 ~ 1588261 (-) True G257
AMCG00003392 mRNA downstream 22388 594275 ~ 597178 (-) True AMCG00003392
AMCG00003391 mRNA downstream 79825 538794 ~ 539741 (-) True AMCG00003391
AMCG00003390 mRNA downstream 379053 232621 ~ 240513 (-) True AMCG00003390
AMCG00003389 mRNA downstream 542058 62457 ~ 77508 (-) True AMCG00003389
AMCG00003394 mRNA upstream 32838 660528 ~ 664276 (-) True AMCG00003394
AMCG00003399 mRNA upstream 43671 671361 ~ 802713 (-) True AMCG00003399
AMCG00003401 mRNA upstream 291622 919312 ~ 930578 (-) True AMCG00003401
AMCG00003400 mRNA upstream 317533 945223 ~ 957169 (-) False AMCG00003400
AMCG00003402 mRNA upstream 440349 1068039 ~ 1216767 (-) True AMCG00003402
TU425 other upstream 1769952 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1769952 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1810037 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2766967 3394657 ~ 3430272 (-) True G531
TU920 other upstream 4023081 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile