RNA id: AMCG00003394


Basic Information

Item Value
RNA id AMCG00003394
length 654
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00003394
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 660528 ~ 664276 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAACCTATACCCGTGGAGCCCCAACAGTATTTTTCATAAATCTATTCTGGTCTTTGTTGGTCTACTCACTGGAAGAAGACCCCAGAGGGGGAGTACCTTTCCTCAATGGATATTACAATGGCCATTCCATGCTTTATTTCAATAGAGATGAAGTGGGAGCCCTGCAGCAAAAGGCACAGGGTTCACACTATCACATTGCCAAAAAGATTCGTGAGGCTGGACAGACAATGCTTGCCCACCCTGACGAGTATCTCCCGCCATGGGACCCTGTGGATTTCAGTGCTCGCTGGAATGAGATCTATGGCAATAATCTAGGAGTGCTGTCTATGTTCACCATATTGTTTCCCGAAACCATGGGGGCACTGGATCTGGCGAGAGACTACATGGAGAGGATGGCAGCTCAACCTAATGCTCCCTGGGATGAGGTACCTTTTGCCCATTCTCTTGTTGGATTTGCCACTGCTTACGACTTTCTTTATGACTACCTAAGCAAGCCCCAGCAGGAGCGCTTTCTGCAAGTGATTGCCAATGCTACAAGATACATGTATGAGAAATCTTACATCCGGGGATGGGGATTCCAGTACCTTCACAATCACCAGCCAACTAACTGTGTGGCCCTTCTGACTGGAAGCCTTGTTCTAATGAACCAA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0048869 cellular developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136 lncRNA downstream 44208 614569 ~ 616320 (-) True G112
TU135 lncRNA downstream 44891 614191 ~ 615637 (-) False G112
TU137 lncRNA downstream 44891 614470 ~ 615637 (-) False G112
TU125 lncRNA downstream 101794 519101 ~ 558734 (-) True G103
TU109 lncRNA downstream 174628 485584 ~ 485900 (-) True G89
TU150 lncRNA upstream 70490 734766 ~ 769986 (-) True G122
TU205 lncRNA upstream 280962 945238 ~ 957196 (-) True AMCG00003400
TU225 lncRNA upstream 369384 1033660 ~ 1035682 (-) True G188
TU251 lncRNA upstream 477962 1142238 ~ 1158563 (-) True G212
TU305 lncRNA upstream 923541 1587817 ~ 1588261 (-) True G257
AMCG00003393 mRNA downstream 32838 619566 ~ 627690 (-) True AMCG00003393
AMCG00003392 mRNA downstream 63350 594275 ~ 597178 (-) True AMCG00003392
AMCG00003391 mRNA downstream 120787 538794 ~ 539741 (-) True AMCG00003391
AMCG00003390 mRNA downstream 420015 232621 ~ 240513 (-) True AMCG00003390
AMCG00003389 mRNA downstream 583020 62457 ~ 77508 (-) True AMCG00003389
AMCG00003399 mRNA upstream 7085 671361 ~ 802713 (-) True AMCG00003399
AMCG00003401 mRNA upstream 255036 919312 ~ 930578 (-) True AMCG00003401
AMCG00003400 mRNA upstream 280947 945223 ~ 957169 (-) False AMCG00003400
AMCG00003402 mRNA upstream 403763 1068039 ~ 1216767 (-) True AMCG00003402
AMCG00003403 mRNA upstream 580278 1244554 ~ 1246054 (-) True AMCG00003403
TU425 other upstream 1733366 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1733366 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1773451 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2730381 3394657 ~ 3430272 (-) True G531
TU920 other upstream 3986495 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile