RNA id: AMCG00003399


Basic Information

Item Value
RNA id AMCG00003399
length 1212
RNA type mRNA
GC content 0.57
exon number 10
gene id AMCG00003399
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 671361 ~ 802713 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgatgagtgaaattaaaTCTGGACATAAGGAGCTGTTGTTCACAACGAGGGAGTGGAATCAGTTGCAGGAGTTGGTGGACATCCTGAAGCCGTTTGCAGAAGCAACAGATTTGACCCAGGGGGAGAGGATGGTTACCATCAGCTCTGTTGTTCCCTCTGTTTTTGCTCTGAATCACCACTTGGAGAAGCTGAAGTCTCAGTGGGTGGTACACCATGTACTTGTCAACCCTGAAGTCAAGGAAGTGCTTACACAAGGAGTGAAGGACCCTGCGGTTCATGGAAGGAAACTTATTGTTATTTCAAACTTGGATTCACCACACTGGATATCACTTGTCGGAGCGCGCATCAAGCTGGACCTGGCTGCCCAGGATGACCAGGGTGGCCCTTTTGCCCAGGTGAACCTGGGATTCCTGGATTCCCACTTGGTCCTCTTGACCCTGGTATTCCACTTTCCCCTCTTGGCCCTGGTTCTCCCCTCTGCCCTGGACCAGGAAGTCCTGGAGCACCATTTTCTCCTGGCTTTCCTATACCTCCAGGCCCAGGAGGTCCGGACAGGCCTTTTGGTCCAGGCATACCCATGGGTCCTGGAGCCCCATCTAGTCCTGGCATTCCCTGCTTCCCTGGCTCCCCTGGGAAGCCAGATCTGCCAGGGCCTGGTTGGCCAGGAGCACCTGGATTTCCTTTGGCACCTTGTTCCCCTTGAGCCCCTGGTTGGCCTGGTTGTCCATGTGGCCCTGGTTTGCCAGGAGCAGAGATGCCCGAAGGTCCTGGAATCCCAGGGGATCCAGGCATGCCCCTTGGACCTTGATGACCAGGAGTCCCTGGATCGCCTTTTTGACCAGGAACTCCCCTCTCCCCAGGTTTTCCTGGTGACCCTGGCATGCCTGCCTTGCCGGGAGAAGAGTATCCTTGTGGTCCAGGGGGCCCAGGTGGACCTTGTGGTCCTGGCATCCCATAGCCACCCTTCCCTGGGGGCCCGGGGGGGCCAGATTAGACAGGAGGTCTTAGTACTAGAAGTCGGGGACCAGcGACAAACATCAGAGGGATGTCCCACCCCGGCTCGTGAACTGAACCAGTCAGAGCTGAGGCTGCGGCTGAAGAGAGTGCTCAGCAACAACAAACCCTGCAGACGCTGGTCCAGCAACTTCAGGTGCGAACTCCTGCACCTGTCCCTGCTGTGGCCGCAGCGAACCCGGCTTGGGCTGGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136 lncRNA downstream 55041 614569 ~ 616320 (-) True G112
TU135 lncRNA downstream 55724 614191 ~ 615637 (-) False G112
TU137 lncRNA downstream 55724 614470 ~ 615637 (-) False G112
TU125 lncRNA downstream 112627 519101 ~ 558734 (-) True G103
TU109 lncRNA downstream 185461 485584 ~ 485900 (-) True G89
TU205 lncRNA upstream 142525 945238 ~ 957196 (-) True AMCG00003400
TU225 lncRNA upstream 230947 1033660 ~ 1035682 (-) True G188
TU251 lncRNA upstream 339525 1142238 ~ 1158563 (-) True G212
TU305 lncRNA upstream 785104 1587817 ~ 1588261 (-) True G257
TU311 lncRNA upstream 911864 1714577 ~ 1714856 (-) True G263
AMCG00003394 mRNA downstream 7085 660528 ~ 664276 (-) True AMCG00003394
AMCG00003393 mRNA downstream 43671 619566 ~ 627690 (-) True AMCG00003393
AMCG00003392 mRNA downstream 74183 594275 ~ 597178 (-) True AMCG00003392
AMCG00003391 mRNA downstream 131620 538794 ~ 539741 (-) True AMCG00003391
AMCG00003390 mRNA downstream 430848 232621 ~ 240513 (-) True AMCG00003390
AMCG00003401 mRNA upstream 116599 919312 ~ 930578 (-) True AMCG00003401
AMCG00003400 mRNA upstream 142510 945223 ~ 957169 (-) False AMCG00003400
AMCG00003402 mRNA upstream 265326 1068039 ~ 1216767 (-) True AMCG00003402
AMCG00003403 mRNA upstream 441841 1244554 ~ 1246054 (-) True AMCG00003403
AMCG00003404 mRNA upstream 451156 1253869 ~ 1254981 (-) True AMCG00003404
TU425 other upstream 1594929 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1594929 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1635014 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2591944 3394657 ~ 3430272 (-) True G531
TU920 other upstream 3848058 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile