RNA id: TU205


Basic Information

Item Value
RNA id TU205
length 1549
lncRNA type sense_over
GC content 0.38
exon number 3
gene id AMCG00003400
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 945223 ~ 957196 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCATTGCACTGCATATGGCAGGGCTTCCTCATTACTTTAACTGCTTCCTGTCGAGTTAGTGAGAgagagtagtagtagtactttgGTTGAATGAACATCAGGATTTCATTTGGGAAAagaTTCAAGTAACAATGAATGTGGAACACGAGGTATCCCTTTTAGCTGAGGAGATCCGGCGACTTGGCAGCCCAAATGCAGATGGAAAAATCAGCGTGAAGTTTGGAGTTCTTTTTAATGATGACAAATGTGCAAACCTCTTTGAGGCTCTGGTGGGGACTCTGAAGGCTGCCAAGCGGAAGAGGATGATTACTTTTGAGGGAGAGCTTCTTCTGCAAGGTGTCCATGACAATGTAGATGTTATATTACTGCAGGACTAGGACATTTTAGGCTACTATCTGCCTTAAAGTTAACACTGCTGTATACATGCAATACCATGCAAGTCAAAATAACCAATAGTTccaatcaatattttatatttgctaGGACAACTTAAGAAATgaacaagttaaataaaataaatgtatttgctgtaaATTTCATAATAAGACATTTTACATATGGAAAAAGTGTGCAAAAGAACTACCCCCACACCTTGATCACCCGCGTCTCATCTGGACTAACTGTTTTCTTGTTGCTTGATATTGCggatattttatattgaatgtatttttccagttcATCCTTAGAacaggaatgtgaaaaataacaattggaAAGTATGTagtatataattaattacttttttatgaTGGTTTTGTTAGTAAACAGAAAATACTGAAGACCTACGTTTACTTTTGGTCACAGAGCAGACAAACTGCATTAATTCTGCTTTACAAACATTGAATCTTTTGTGGTTGTTTACTCAATGATCAAAACTACATTAATATTTTGCTGtagatttatttacaaaaagcCTGTAAACTGATACTAATTAGGGAGGGTTTTGATCTAGTTATGTAGAAAAAGTGCTCAGTTACCCTGGACATAGATACAAAAGataatttttaaatggttcAAAATTAATGCACTATGCAGTTCACAATATAAATggtatgaaatgttttttttactatttcaaTGTAAGTGTCCACAGAAATTGCTTCATAAGTTAACATGTTCTAGTTTGTTAGCCGCTGGGGTGTGGTTTGACAACCTTAATCTGATCCAAgaataaatctattttatatagttttggaCTTCTATATATTAGTCTTCAATTTTAGacagctgtactgtactgtatcaaCAAGTCCAAAGTTACTCTTCTAGGTATGTGGTTAAAAATACTTGAGTAAATCGCACAACTGAGGTAGACCGCActggaaaaacaataaagccaaactgtaatgttttttttgtatgtactaTGTATTGCTGTctttataatgaatgtattttattctaaataattaattaatatgaaacaaaaaagtggCATTTGACTTCATGATAGccatttgtatttgcagtaatgtATCTGCAACAAAAGCACCAGTTtggaaataataccaaaaaataaaaaggctatttactgaaatgtaccAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150 lncRNA downstream 175252 734766 ~ 769986 (-) True G122
TU136 lncRNA downstream 328918 614569 ~ 616320 (-) True G112
TU135 lncRNA downstream 329601 614191 ~ 615637 (-) False G112
TU137 lncRNA downstream 329601 614470 ~ 615637 (-) False G112
TU125 lncRNA downstream 386504 519101 ~ 558734 (-) True G103
TU225 lncRNA upstream 76464 1033660 ~ 1035682 (-) True G188
TU251 lncRNA upstream 185042 1142238 ~ 1158563 (-) True G212
TU305 lncRNA upstream 630621 1587817 ~ 1588261 (-) True G257
TU311 lncRNA upstream 757381 1714577 ~ 1714856 (-) True G263
TU330 lncRNA upstream 869301 1826497 ~ 1830075 (-) True G277
AMCG00003401 mRNA downstream 14660 919312 ~ 930578 (-) True AMCG00003401
AMCG00003399 mRNA downstream 142525 671361 ~ 802713 (-) True AMCG00003399
AMCG00003394 mRNA downstream 280962 660528 ~ 664276 (-) True AMCG00003394
AMCG00003393 mRNA downstream 317548 619566 ~ 627690 (-) True AMCG00003393
AMCG00003392 mRNA downstream 348060 594275 ~ 597178 (-) True AMCG00003392
AMCG00003402 mRNA upstream 110843 1068039 ~ 1216767 (-) True AMCG00003402
AMCG00003403 mRNA upstream 287358 1244554 ~ 1246054 (-) True AMCG00003403
AMCG00003404 mRNA upstream 296673 1253869 ~ 1254981 (-) True AMCG00003404
AMCG00003407 mRNA upstream 699189 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003416 mRNA upstream 1113632 2070828 ~ 2088149 (-) True AMCG00003416
TU425 other upstream 1440446 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1440446 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1480531 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2437461 3394657 ~ 3430272 (-) True G531
TU920 other upstream 3693575 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile