RNA id: AMCG00003401


Basic Information

Item Value
RNA id AMCG00003401
length 1233
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00003401
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 919312 ~ 930578 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCaaccagaaaaacaacaagggGAAGCGAAATAAACGCACTAATAGCAGTGGAGATGAGCAGGAAAATGGAGCCACTGCTGCTGCAACAGGGGCACAGATGGTGGCAGCAACATTATTAGGAGCTACAGCTGCACAACCAAATGAGAACACCAGTGAAGCCCCTTGTGCCACACCTTTGGTCTGTAGTTTGGGAAGGCCTATAGACCTGGAGAAAGATGACTATCAGAGAGTGGTCTGTAATAGTGAGCTCTGCACTTATGGAAACTGGATGCATCTGCAGTGCTTCTACGAGTGGGAGAGCAGCATTCTGGTGCAGTTCAACTGTATTGGCAGAGCCCGCAGCTGGAATGAGAAACAGTGCCGACAGAACATGTGGACCAAGAAGGGCTATGATTTGGCTTTTCGTTTCTGTTCATGCCGCTGTGGCCAGGGCCATCTCAAGAAAGACACAGACTGGTATCAGGTGAAGCGCATGCAGGATGACCGGAAGAAGAAAGTGCTTCCTGAGAAGAACCTTATGAAATACAGTAGTGGGAGTAGTGGAGGTGGGAGAGAATCTCCAGACGATCTCAAGAAAGGAAAGCAATCATCTGGAAATAAATTTTTGCACAAGCTAGCTAGCCACGAACTTCCAAGACGGCAATCTATAGACAGGCAGAATTTTCAGGAAAAGGGCCCTTTCTGTGGAAACAATATGGGCCTCCGTTCACCTTGTGATTCACCTGGACAATCTCCCCCTATCGgcttctctttcttctcctcagCCTCCTTCAGTGGTCCTCGCAGTTCCCGGCACTTGGGGGAGTTCCTTAAAAATGCCATCCACATGGAAAATCAACGTAAGCACCTATTGGCTACTGTAGGGCCTGGCCGGAACTCCCATGTCGAGGAAGGTGCTGGGCTTCCCCTCCCAAGGCTTGCCTCTGTGGATGGCCCTGTGCAATTTCTTCGCAGATTAGACCTCTCTGAGCTCTTGGCACATATCCCCCGCCACAAACTCAACACCTACCATGTACGCATGGAGGATGATGCCCATGCTGGCCAGGGTGAGGACCTGAGGAAGTTCATCTTGTCAGCACTCAGTGCCAGTCACAGGAATGTTGTCAGTTGTGCCCTGTGCAACCGGACACTGCCTGTCTTTGATCAGTTCCCCCTTGTGGATGGAACCCTTTTCCTGAGCCCTTCCCGACATGATGAGATTGAGTATGATGTGCCCTGCCATCTACAA

Function

GO: NA

KEGG:

id description
K23049 HECA, HDC; headcase protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150 lncRNA downstream 149326 734766 ~ 769986 (-) True G122
TU136 lncRNA downstream 302992 614569 ~ 616320 (-) True G112
TU135 lncRNA downstream 303675 614191 ~ 615637 (-) False G112
TU137 lncRNA downstream 303675 614470 ~ 615637 (-) False G112
TU125 lncRNA downstream 360578 519101 ~ 558734 (-) True G103
TU205 lncRNA upstream 14660 945238 ~ 957196 (-) True AMCG00003400
TU225 lncRNA upstream 103082 1033660 ~ 1035682 (-) True G188
TU251 lncRNA upstream 211660 1142238 ~ 1158563 (-) True G212
TU305 lncRNA upstream 657239 1587817 ~ 1588261 (-) True G257
TU311 lncRNA upstream 783999 1714577 ~ 1714856 (-) True G263
AMCG00003399 mRNA downstream 116599 671361 ~ 802713 (-) True AMCG00003399
AMCG00003394 mRNA downstream 255036 660528 ~ 664276 (-) True AMCG00003394
AMCG00003393 mRNA downstream 291622 619566 ~ 627690 (-) True AMCG00003393
AMCG00003392 mRNA downstream 322134 594275 ~ 597178 (-) True AMCG00003392
AMCG00003391 mRNA downstream 379571 538794 ~ 539741 (-) True AMCG00003391
AMCG00003400 mRNA upstream 14645 945223 ~ 957169 (-) False AMCG00003400
AMCG00003402 mRNA upstream 137461 1068039 ~ 1216767 (-) True AMCG00003402
AMCG00003403 mRNA upstream 313976 1244554 ~ 1246054 (-) True AMCG00003403
AMCG00003404 mRNA upstream 323291 1253869 ~ 1254981 (-) True AMCG00003404
AMCG00003407 mRNA upstream 725807 1656385 ~ 1724582 (-) True AMCG00003407
TU425 other upstream 1467064 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1467064 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1507149 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2464079 3394657 ~ 3430272 (-) True G531
TU920 other upstream 3720193 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile