RNA id: AMCG00003402


Basic Information

Item Value
RNA id AMCG00003402
length 1940
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00003402
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 1068039 ~ 1216767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATTTTGTCTTGTGCTTGGATAATTGCTGACcctttgaaaaatgtacacCTCCGCTTATAACATGCACAGTCTAGAATTGATGATTCAACATGAACACAACATGTATTTTTGCAAAGAAACTAGGTTTCAGTGCAGCAAATGAAAAGTtatactttcttatttttttgatttgtaCAAGAGAAGGGGATTGTATGAgggtttcatttgtttttctctcattcAGCTACATCTGACATGATGGAGAACAATAATCAAACCTCAGAGCTCACCACTAACAATCAACAAAGTAACACAGGCAGTGAGGCCACAGTTCCTGAATTCAATGGTACAGACAGGCAGGATTTGGAAAAAGAACCAACACCAGAGCCTAAACTACAGACAGTTGTTTGTGATATTTCAGAAGAACTAGGTCGACAGCTGGAAGACATCATTAACACATATGGGTCTGCATCTAGCTTGGTAGAAGAGCAGAGTATCTGCAAAGAGTCTGAAGATGTTGACAAAGGTGATTCCCTCAGTCAATGGGAATCAGAGGAGAGCAATGGAGATCAATCTGTCCCTGGAGAGGGTATGGCATCGAAAGAAGCAAGTGCTACAAAGGAACAGAAACTGGAAAAGAAGATTATCAAAGGACTGGAGGAGCATCGGTCTGAACAGAAGCAACTGAAGGCCCTTCAGAAGAAGCAGGTCCAGATATTGAAAGAGAAAGATCAGCTCCAGAGTGAACACAGCAGAGCTGTCCTAGCCCGTAGCAAGTTGGAGAGCCTGTGCCGAGAGTTGCAGAGGCACAACAAGACCCTCAAGGAGGAAACGTTCCAGAGGTGTCGGGAAGATGAAGAGAAGCGAAAGGAGATCACCACTCACTTCCAGAGTACTCTGAACGATATCCAGcacctTGATAAGATCTTCAAGCATCGTGATTTGCAGCAGAAGCTGGCAGATGCCAAACTTGAGCaggctgaaatgaaaataaggGAAGCAGAGGCAAAGCATGCCAGAGAAAAAGAATATTTGCTAAAAGAGGCAATTGAAAGTACAAAGAAGTGCCAAGCAATGAGGGATCAGGAGTTGCAGCTGAAGAAGCAGTTACTGAACCAAGCTGCTGAGTGGAAGCTACAAGCTAACCATCTGAAAGAGCAAGAGACAGTGATGAAGGCACAGCTTTCTCTGTACTCCGAAAAGTTTGAAGAATTCCAGGGGTCATTGGCCAAGAGCAATGATGTGTTTACCAGTTTCAAACAGGAGATGGACAAAatgaccaaaaaaatgaaaaagttagAGAAAGAGTCAACTGTGTGGAGGACCCGCTTTGAAAGCTGTAACAAGGCCCTGGTGGATATGATTGAAGAGAAAGCACTAAGAGAGAAAGAGTTTGGATGTTTCTCACTGAAGATTCAGAGGCTGGAGAACTTGTGCAGAGCCCTGCAGGATGAGAGGACCATACTGTACAAGAAGATCTCAGAAGTTCGGAATATTAATGAGAGCCcaaaggagaaggaggaaatgATTGAGGAAGAGGCTCCCCAGGAATTACCTTGGCCAAAGGAGTTGGTAGCTTTGAAGGCTGAGGAAGATCGCTTAAAGGACCTTGCAGCTTCCTTCATGGTCTCCCACAACTCAGAGGAGCGCCCTGAGAGTCCTGACAGTGTAGGGGCCTCCCCTGAGGCAATAGAGGCTGAGAGATTAGTTGATTTTCAGGAAGAGCTGGAAGAGATTACTCACCCCAATTCTGTCCCCATAGTCTCTAGTGATAACCCAGCACAACCCGACTCCAAAAACCCATGTACAACCCAGGAGAATATGGACAAGAATATGGAATGCAATGGAACACTGCAGTTGGTGGACATCTATAAGTACACTTTCTACATCAACAGAAAAGGGaaGTACCAGACCAGGCAGCTGAAGTGGGATATGCAAGCTCCCCAGTGGAGGTGCCAC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225 lncRNA downstream 32357 1033660 ~ 1035682 (-) True G188
TU205 lncRNA downstream 110843 945238 ~ 957196 (-) True AMCG00003400
TU150 lncRNA downstream 298053 734766 ~ 769986 (-) True G122
TU136 lncRNA downstream 451719 614569 ~ 616320 (-) True G112
TU135 lncRNA downstream 452402 614191 ~ 615637 (-) False G112
TU305 lncRNA upstream 371050 1587817 ~ 1588261 (-) True G257
TU311 lncRNA upstream 497810 1714577 ~ 1714856 (-) True G263
TU330 lncRNA upstream 609730 1826497 ~ 1830075 (-) True G277
TU332 lncRNA upstream 624031 1840798 ~ 1843781 (-) True G279
TU362 lncRNA upstream 810154 2026921 ~ 2027350 (-) True G306
AMCG00003400 mRNA downstream 110870 945223 ~ 957169 (-) False AMCG00003400
AMCG00003401 mRNA downstream 137461 919312 ~ 930578 (-) True AMCG00003401
AMCG00003399 mRNA downstream 265326 671361 ~ 802713 (-) True AMCG00003399
AMCG00003394 mRNA downstream 403763 660528 ~ 664276 (-) True AMCG00003394
AMCG00003393 mRNA downstream 440349 619566 ~ 627690 (-) True AMCG00003393
AMCG00003403 mRNA upstream 27787 1244554 ~ 1246054 (-) True AMCG00003403
AMCG00003404 mRNA upstream 37102 1253869 ~ 1254981 (-) True AMCG00003404
AMCG00003407 mRNA upstream 439618 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003416 mRNA upstream 854061 2070828 ~ 2088149 (-) True AMCG00003416
AMCG00003417 mRNA upstream 1078683 2295450 ~ 2303413 (-) True AMCG00003417
TU425 other upstream 1180875 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1180875 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1220960 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2177890 3394657 ~ 3430272 (-) True G531
TU920 other upstream 3434004 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile