RNA id: AMCG00003404


Basic Information

Item Value
RNA id AMCG00003404
length 978
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00003404
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 1253869 ~ 1254981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACAGAATATAACACAAAGAGGTCACCATGAATATGCAGAATCTGAAAACAAAGGGAATTTCTTAGAAATTCGAGAAACAATTGCTAAACACAATCCTGTGGTAGGCAAAAAAATTAAggcaatgcaaaatacacaagCAATACCATACAGAATGAAAGTCTGCAGTGCTTATCAAGTATTTTGCGTGATTCAATTGAGAGTGAGGGTATTCTCTGTCATTGCTGATGTAAGCAAAGATCTGCAAAAGAAGGAGCAGCTGTTATTAGTAGTTAGGTATTACTACAGTGGGGCTGTGCATGAAAGCTTTCTTGATTTCCAACATGCCCAACATCTAGATGCTAGCTGGCTGAGCGAAATGATCATCCAGTGTTTAGAAAGCTATGACCTTCAGTACAAATCAAATCTTGTTGGACAAAGTTATGATGGGGCCTCAGTGATGAGTAGCAAACACTCAATTGACACTGTGAAGTCAGTTCCAGAGGCTGATTGCTTCTTCTCACTGCTTGAGAAGCTCTATGTGTACATGTCAGGATCTTATGTGCACCAGAAATGGCTGGATCTTCAAAAGGAGATGTATGGTGGCCAGCCTAGGGAGTTACAAAAATTTAGTAACACAAGATGGGCATGTAGAGCGTTGGCTTGCAGGAACTTGATGGAAAGGTTAccagctgtgctgtgtgttcttCAAAATATAAGCACAATTGACCTCACATTCATAGGCCTCCTTGCAACCTTCCGAAAACTGTTCGGTAACACAAAGCTGCTTTCTGACCTGCTACAGTCACCTTCAGTTGATTTATCTATGGCAGTAGACATGGTGGAGTCACTTCACGATACATTTCAGGAATACAGGACTGAGACATTTAGTGATCAACTGTGGCACGACATAGAAACAGCTAAACAGTGCAATATAGCTGTTGAGAATGGTGAGAAGAGATCACAAAAAGTTAACTCCAAACTTGGTGGGTGTAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251 lncRNA downstream 95306 1142238 ~ 1158563 (-) True G212
TU225 lncRNA downstream 218187 1033660 ~ 1035682 (-) True G188
TU205 lncRNA downstream 296673 945238 ~ 957196 (-) True AMCG00003400
TU150 lncRNA downstream 483883 734766 ~ 769986 (-) True G122
TU136 lncRNA downstream 637549 614569 ~ 616320 (-) True G112
TU305 lncRNA upstream 332836 1587817 ~ 1588261 (-) True G257
TU311 lncRNA upstream 459596 1714577 ~ 1714856 (-) True G263
TU330 lncRNA upstream 571516 1826497 ~ 1830075 (-) True G277
TU332 lncRNA upstream 585817 1840798 ~ 1843781 (-) True G279
TU362 lncRNA upstream 771940 2026921 ~ 2027350 (-) True G306
AMCG00003403 mRNA downstream 7815 1244554 ~ 1246054 (-) True AMCG00003403
AMCG00003402 mRNA downstream 37102 1068039 ~ 1216767 (-) True AMCG00003402
AMCG00003400 mRNA downstream 296700 945223 ~ 957169 (-) False AMCG00003400
AMCG00003401 mRNA downstream 323291 919312 ~ 930578 (-) True AMCG00003401
AMCG00003399 mRNA downstream 451156 671361 ~ 802713 (-) True AMCG00003399
AMCG00003407 mRNA upstream 401404 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003416 mRNA upstream 815847 2070828 ~ 2088149 (-) True AMCG00003416
AMCG00003417 mRNA upstream 1040469 2295450 ~ 2303413 (-) True AMCG00003417
AMCG00003418 mRNA upstream 1075714 2330695 ~ 2337060 (-) True AMCG00003418
AMCG00003423 mRNA upstream 1142795 2397776 ~ 2401558 (-) False AMCG00003423
TU425 other upstream 1142661 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1142661 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1182746 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2139676 3394657 ~ 3430272 (-) True G531
TU920 other upstream 3395790 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile