RNA id: AMCG00003418


Basic Information

Item Value
RNA id AMCG00003418
length 1782
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00003418
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 2330695 ~ 2337060 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATAACATGGGAAGCAGGAAGAGCAAGCAATACCGCTTTTACAGTCTGAtgtcaatacattaatttgatagTTTGCGATGAACTAGAAGtaaggaaatatgtttttcatcaaTTTGAGTCTTCTTGCGGCAGCTGTGGTTTTCCTTGTTGGCTGCGGCAGCTGTCAATACCAGCCCACCTGGGAGTCGCTCGACTCCAGACCTCTACCAGCCTGGTTCGACCAAGCCAAATTCGGGATCTTTGTGCACTGGGGGGTATTCTCTGTTCCCAGCTTTGGCAGTGAATGGTTTTGGTGGCACTGGCAGAAGCAACAATGGAAGCCCTATGTTGATTTCATGAAGAACAATTACCCTCCTAATTTCCAGTACCAAGACTTTGCTCCAGAGTTCACTGCAGAATTCTTTGATGCCAAAAAGTGGGCAGACATCTTTGCTGCATCTGGAGCAAAATATGTTGTCCTCACCACTAAGCACCACGAAGGGTACACACTCTGGGGCTCGAATTACTCGTGGAACTGGAATGCGGTGGATGTGGGGCCTAAGAGGGACCTGGTGAAGGAGATCGCCAGTGCCGTGCGGGGGCACAAGGACCTGCGGCTGGGGCTGTACCACTCCCTCTTTGAGTGGTTCCACCCACTCTTCCTAGAGGACGCTGCCAATAACTTCACTACCAACAAGTTCCCCCTGGCCAAGTCCTTGCCCGAGCTGTACGAGATAGTGAACCAGTATCAGCCGGAGGTTCTGTGGTCTGACGGCGACGGCAACGCCCCTGAAAGCTACTGGAACAGCACTGGTTTCCTGGCTTGGCTTTACAATGACAGCCCAGTTCGTAAGACGGTGGTTACAAATGATCGCTGGGGCTCTGGCTGCATTTGCAAACACGGCGGCTACTACACCTGCACCGACCGATACAACCCGGGTCACCTTCTCAAACACAAGTGGGAGAACTGCATGACCATTGACCAGAAGTCATGGGGCTACAGAAGAAATGCAGACCTTAAGGACTACCTTACCATCGAGCAGCTGGTTCAGACACTGGTAGAAACAGTCTCCTGTGGAGGCAACTTGCTAATGAACGTGGGGCCGACCCATGATGGCcaaattacacccattttcgAGGAACGTTTAAGGCAGATGGGCCAGTGGTTGAGTGTAAATGGGGAGGCAATCTACAACTCTACTCCATGGAGGATCCAGAATGACTCTGTCACCCCAGGGGTGTGGTACACAGCAAATCCGCAGGAGAAAGCCATCTATGCAGTTTTCTTACAGTGGCCAAACACAGGAAATGTTGTCCTCAGTGATCCTTCTGTAACCAAGGAGACACAGGTGGGATTACTTGGTTACTCCCAGCCGTTGAAGTGGAAGCCGCTGACACAAGAAGGGCTGCTGGTGATACTGCCTCAACTTTCTTACAGTCAGATGCCTTGTTTCTGGGCCTGGACCCTCAGACTTACTGGAACAGCATAATGACCAACCTAAGGACTGGTTTTACACTTAGACTTCTGGAAACTGTTAAAAATTAAGCTATCAAATAATTGAAGAAAGAACATTCAGTtgtcattatatatttgttttcaggtCTGATATGACCTAATTCTTCAAGGGTGGTAAACTTGTGATGAGGTGTAAATATGTCCCATGAATCTTGAGACAACtgcatatttcaatacaaaggtaatgtaatgtaatgtaatgtagagTACCTGCATAAAGTTGAATTAAAAGACCCAAAAGTAATTAATCCAAAACAGTACAAGtctgaattgctttgtattgaaC

Function

GO: NA

KEGG:

id description
K01206 FUCA; alpha-L-fucosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378 lncRNA downstream 243937 2086458 ~ 2086758 (-) True G322
TU362 lncRNA downstream 303345 2026921 ~ 2027350 (-) True G306
TU332 lncRNA downstream 486914 1840798 ~ 1843781 (-) True G279
TU330 lncRNA downstream 500620 1826497 ~ 1830075 (-) True G277
TU311 lncRNA downstream 615839 1714577 ~ 1714856 (-) True G263
TU410 lncRNA upstream 10002 2347062 ~ 2347409 (-) True G345
TU451 lncRNA upstream 68583 2405643 ~ 2406084 (-) True G372
TU547 lncRNA upstream 668312 3005372 ~ 3005681 (-) True G453
TU557 lncRNA upstream 669908 3006968 ~ 3058204 (-) True G458
TU568 lncRNA upstream 749405 3086465 ~ 3111051 (-) True G464
AMCG00003417 mRNA downstream 27282 2295450 ~ 2303413 (-) True AMCG00003417
AMCG00003416 mRNA downstream 242546 2070828 ~ 2088149 (-) True AMCG00003416
AMCG00003407 mRNA downstream 606113 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003404 mRNA downstream 1075714 1253869 ~ 1254981 (-) True AMCG00003404
AMCG00003403 mRNA downstream 1084641 1244554 ~ 1246054 (-) True AMCG00003403
AMCG00003423 mRNA upstream 60716 2397776 ~ 2401558 (-) False AMCG00003423
AMCG00003424 mRNA upstream 70994 2408054 ~ 2415951 (-) True AMCG00003424
AMCG00003422 mRNA upstream 90337 2427397 ~ 2438561 (-) True AMCG00003422
AMCG00003426 mRNA upstream 170498 2507558 ~ 2523325 (-) True AMCG00003426
AMCG00003431 mRNA upstream 337098 2674158 ~ 2725919 (-) True AMCG00003431
TU425 other upstream 60582 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 60582 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 100667 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 1057597 3394657 ~ 3430272 (-) True G531
TU920 other upstream 2313711 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_01926369_01934665.mRNA True 2125 mRNA 0.48 6 CI01000310 1926369 ~ 1935662 (-)