RNA id: AMCG00003423


Basic Information

Item Value
RNA id AMCG00003423
length 1128
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00003423
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 2397642 ~ 2401895 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGACGGGCGACTTGCAAGCGATGTTTTGCATATAAATGCCGACAATCTGCAACTACTTCGCAGGTGCGAGAGCTCTGAGGACGATGACAAAAAATTaaagaggagggaaaaaaacagagtTGCTGCCCAAAGAAGTCGCAAGAAGCAGACCCAAAAAGCAGACAAACTGCATGAGGAATATGAGACCCTTGAACAAGAGTACAGCTCCCTGAAGAAGGAAGTCCAGAAACTCACTGAGGAGAGGAAGCGTCTGACAGAAGCTTTGAAGGCCCACGAGCCCCTTTGTCCCCTGGTGCACTGTGCCATGAACCTGATGCCTGTTCCCAGGCCTGACGTCATCACCAGCTGCCTGCCCAGATAGAGACTGAGGTGATATTTGTTGGTGGCTTTTGTATCCATGGGTGACTGGTTCACACACAGGGAGGTTGCAATCCTCAGAAGATTCCAGATtattaatttgaagaaaaactgaaatgtatcaTGTTTCTCACAAAAATAATCATTCTTGACAGTAGGCAGGAAGGGTATTTCTAATCCTGCTTCAATAGAACTGGCTGTTTGTCAGTCAGTTGGAGATGCAGTTTTCAGTTTTGCTAGTACTCATTTTAGAAGTGGTATTATCTTTTAAATCTGTCTGAATCCTCCATAGTTGTGAAAAGCAGCCACCAGTAATGGGTTAAAGAAGTTAGTTCAAAGAACTTCATGGAAACAgtaagtcaaataaaaatacccAATACTTTACAGACTTGGTTCATGTTACATCTGAAAGATATTCATGCAAACGCTGGACTTGTGGGAATGCTCAGGGATATGTATGCCTTCAAAGTAaaatttttctttgtttttaataagtaaaacataaatatttccaTCCCTTTCTGTGATTGGTCTAGCTTCAACACTTAATGTACATACcttttattgaaacatttttttgttgatgtCCTGTTTTGAATGTTgagttgtatttaatatttataagaCAGTGTTTTTATATTGGTCTTTATGTGTGTGAATGGTTCTTACTTCTGCTGTAATACTTCCAGATAAATGAAATGCCTTTGATACAGACTCATATGCTATGATcgaacaaaataaattaattgaatgtacAGTTTGTACA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410 lncRNA downstream 50367 2347062 ~ 2347409 (-) True G345
TU378 lncRNA downstream 311018 2086458 ~ 2086758 (-) True G322
TU362 lncRNA downstream 370426 2026921 ~ 2027350 (-) True G306
TU332 lncRNA downstream 553995 1840798 ~ 1843781 (-) True G279
TU330 lncRNA downstream 567701 1826497 ~ 1830075 (-) True G277
TU451 lncRNA upstream 4085 2405643 ~ 2406084 (-) True G372
TU547 lncRNA upstream 603814 3005372 ~ 3005681 (-) True G453
TU557 lncRNA upstream 605410 3006968 ~ 3058204 (-) True G458
TU568 lncRNA upstream 684907 3086465 ~ 3111051 (-) True G464
TU609 lncRNA upstream 794347 3195905 ~ 3211877 (-) True G500
AMCG00003418 mRNA downstream 60716 2330695 ~ 2337060 (-) True AMCG00003418
AMCG00003417 mRNA downstream 94363 2295450 ~ 2303413 (-) True AMCG00003417
AMCG00003416 mRNA downstream 309627 2070828 ~ 2088149 (-) True AMCG00003416
AMCG00003407 mRNA downstream 673194 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003404 mRNA downstream 1142795 1253869 ~ 1254981 (-) True AMCG00003404
AMCG00003424 mRNA upstream 6496 2408054 ~ 2415951 (-) True AMCG00003424
AMCG00003422 mRNA upstream 25839 2427397 ~ 2438561 (-) True AMCG00003422
AMCG00003426 mRNA upstream 106000 2507558 ~ 2523325 (-) True AMCG00003426
AMCG00003431 mRNA upstream 272600 2674158 ~ 2725919 (-) True AMCG00003431
AMCG00003435 mRNA upstream 812253 3213811 ~ 3217086 (-) True AMCG00003435
TU462 other upstream 36169 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 993099 3394657 ~ 3430272 (-) True G531
TU920 other upstream 2249213 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 2944281 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 8549618 10951176 ~ 10956335 (-) False AMCG00003586

Expression Profile