RNA id: AMCG00003424


Basic Information

Item Value
RNA id AMCG00003424
length 848
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00003424
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 2408054 ~ 2415951 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTGCCGTGTCCGATACTAGCTTCAACATCCGGGTCTTGGAACATTTGAAGGAAATGGCGCTAAATTCCAGAGATGGTGGTGAGTTTGAATCAGGCGTCActtcaaacacaaatattaaatcCACTCTTGACGATATGAAAACGTGCAGAGATGAGCTGGAGGTGAAGGAGGAGGATTTCAGAGTGGAGTGTTACTCGAAGACATTAGTTGTCGAGCAATTGGAGAAGTATCGGGTAATCTTGAAAAAGGTGTTGGATGGACAGCCCCACATCTCGGGAGAAGCCAGGGAGAGAGCACTGCAGGATTTGCTGTGGGATTTCGAGACAGCTGTTCAAGATAACGTAAAATGTAACGGTCAGTCTTGGGAGGACGCACCTGACGAAGTTATTCATGATGCGGATTCAAAGAGCCTGGATGACCTACTTGATGAGAACATCCTGGAAACTGCCATGAAACGTAGCCACTGTCCCAAGAAAATCCTTCCCTACGTTGGATTATACAAGCAAACAGTGCAGTCACAAGAAGTAAAAAAAGATCTGCAGCAAGAAACCACGATGAATAACTTGATGGATTCTGCACCCAAGATTGCCAAACAGGCCAGTACTACTGTTAAGGTTTTGCTGCAGAAAGCAGAAGGTGTGTGCCAGGCACTGAGACTGCAGCCTGCATTGGAATCCTCTGAGGTCCACAGAGAGGTCTTCAACAAGCAATCTGGGTTGGGGAATGGCTTGTCAGGGGACCTGGGCAGACCGCTGAAGGCAACTGCCCCTGGGAACAGTGTCAAGCCCCCAGGAGAGAACAGGCCCCTGTCGAAGAGGCCCTTCCCAGAGAATGTTGCACCCAAC

Function

GO: NA

KEGG:

id description
K11545 NSL1, MIS14, DC8; kinetochore-associated protein NSL1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451 lncRNA downstream 1970 2405643 ~ 2406084 (-) True G372
TU410 lncRNA downstream 60645 2347062 ~ 2347409 (-) True G345
TU378 lncRNA downstream 321296 2086458 ~ 2086758 (-) True G322
TU362 lncRNA downstream 380704 2026921 ~ 2027350 (-) True G306
TU332 lncRNA downstream 564273 1840798 ~ 1843781 (-) True G279
TU547 lncRNA upstream 589421 3005372 ~ 3005681 (-) True G453
TU557 lncRNA upstream 591017 3006968 ~ 3058204 (-) True G458
TU568 lncRNA upstream 670514 3086465 ~ 3111051 (-) True G464
TU609 lncRNA upstream 779954 3195905 ~ 3211877 (-) True G500
TU653 lncRNA upstream 1008137 3424088 ~ 3428291 (-) True G541
AMCG00003423 mRNA downstream 6496 2397776 ~ 2401558 (-) False AMCG00003423
AMCG00003418 mRNA downstream 70994 2330695 ~ 2337060 (-) True AMCG00003418
AMCG00003417 mRNA downstream 104641 2295450 ~ 2303413 (-) True AMCG00003417
AMCG00003416 mRNA downstream 319905 2070828 ~ 2088149 (-) True AMCG00003416
AMCG00003407 mRNA downstream 683472 1656385 ~ 1724582 (-) True AMCG00003407
AMCG00003422 mRNA upstream 11446 2427397 ~ 2438561 (-) True AMCG00003422
AMCG00003426 mRNA upstream 91607 2507558 ~ 2523325 (-) True AMCG00003426
AMCG00003431 mRNA upstream 258207 2674158 ~ 2725919 (-) True AMCG00003431
AMCG00003435 mRNA upstream 797860 3213811 ~ 3217086 (-) True AMCG00003435
AMCG00003437 mRNA upstream 823933 3239884 ~ 3250722 (-) True AMCG00003437
TU425 other downstream 6159 2397642 ~ 2401895 (-) False AMCG00003423
TU462 other upstream 21776 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 978706 3394657 ~ 3430272 (-) True G531
TU920 other upstream 2234820 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 2929888 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 8535225 10951176 ~ 10956335 (-) False AMCG00003586

Expression Profile