RNA id: AMCG00003431


Basic Information

Item Value
RNA id AMCG00003431
length 2789
RNA type mRNA
GC content 0.41
exon number 12
gene id AMCG00003431
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 2674158 ~ 2725919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAAGGAACCCATTTTTGGTTCTAAATGTACTCAACCGAACCCCCGTTCACCTGATTCATGAAATTATATTAGTGGATGACTTCAGTGATGACTCTAATGACTGCCTCCTGCTAGCCAAGTTACCCAAAGTGAAGTGTTTGCGTAATGACCAGCGAGAAGGCCTAATCCGCTCCAGGGTACGAGGGGCAGATGCTGCCCGAGCCGGGGTACTGACATTTCTGGACAGTCATTGTGAGGTGAACAAAGATTggctccctcccctcctccagaGGATAAAGGAGGACCCAACTTGTGTAGTGAGTCCTGTCATTGACATCATCAATATGGATAGCTTTGCATATGTGGCAGCTTCCTCTGACCTCCGAGGAGGTAAGACTCCAATTATTGCTGGAGGGCTGTTTGTGATTGACAAGTCCTGGTTTAATCACCTGGGGAAATATGATACAGCCATGGACATCTGGGGTGGGGAAAACTTTGAGATTTCTTTCCGTGTTTGGATGTGTGGCGGCAGTCTGGAAATCATACCCTGCAGCCGTGTTGGCCATGTCTTCCGTAAGAAACACCCCTACATCTTCCCTGAAGGCAATGCAAACACCTATATAAAGAACACAAGGCGGACAGCTGAAGTGTGGATGGACAAATTCAAACTTTTCTACTATTCAGCACGACCAGCTGCCCGAGGAAAACCCTATGGCGACATTCAGAACCGATTGGAACTCCGCAAAAGTCTTAAATGCAAATCTTTTCAGTGGTACCTGGACAATGTTTATCCAGAGCTGAAAATCCCAGATGAATCAGATTCCAAGTCTGGGGTGATCAAGCAGAGGCAGAACTGCCTTGGGTCTCGCAAGGAAGAAGGGCAGGATATGCCGATACTCACACTAGGACCCTGCATCGGCAGTAAAGGAGTGCTGGCTCTGAATCAGGAATGGAcgtacacacacagccagcagaTCCGCCAGCTGCAGCACTGCCTCTCGCTCTCCACCACCTACCCGGCCTCACAGATCCTGCTCATGCCTTGCAACGAAGGAGATGGGAAACAGAGATGGCAGAAATCTGGTACCCACATTGAGCACTTAGCCTCTCACTTCTGCCTTGACAGTGAAATGGCTCTGGATGAAATAGAGAGTAGCAAAATGCTTGTGATAAACCCATGTGAGCTCACCGCTTTCACCCAGAGATGGCAAGTGTCATTTTCATGATTTCCGGGAGAATGGAAATTCATGTGTGATGTGTGACTGACAGTGCTCTCTCAGGTTTGGGACATTGTCATCAGAAGCTTTGAGAACACAAGAATGGGAGATGGACACCAAAGATGACCAATACAAGGAGTTGAATCCTTCCTGGTTGTATCCCAGGTGAAACTGGAATAAATGGGAAATTCATGTTTACATCCTGTGATTATTGCTGACCAGTCTACACAGCACAGGTCGGTAGGATGGAGTTTGGAAGTCGTGTCACTGGATGGAACGACATGTTGAAAACTGACAGAAAAAGAATGCTGTTTTTTCAGTGGTTactgaagtgtttttgtttgtttgcttttggttGGATGATTAGCTTCCACTCGCTGCTGTGACCCGAAGACTCAAGAAAGGTGGTTTCTAAGGAATGGAAGAGAAGCAATCAGGAAAACATCGTCTGCCTCCCAATTCCAATCCTTCCAATTACAAGGGGTCAAAGTCCAGTTGATTTTGTCAGAAAAGACAAGCAGTTGGACCCAACCACAATTAAGTTAAGTGAGATGTTAGAATGTTAAAAAGAAGTCTAggcaatatttaattttactagCCTGTGACTTAAAGGGCCTTgataaagcaaaaaataatgATGCCCTGGCAGCTGATACCATCATATCCAACAAGTTTGGtcttcaaatgaaatgcatttatgttACAATCACCAACACCGCCTTGCATggcatctgaaaaataaaatgaaagaaacagatataaatactgaaaatgtttttttttttaaatggaaacacaGTACTATTGTGTTCTGATGATGCTGCAAATCTTGGTACCAaagataaaaagtaaaatgatggGGAAAAATTCAGTAAAATCCATTTCAATCAATAACTCGCATTTATAAACAAGTATTTATAGATTCACTAGTACACAGGATGGTTCTACAGTGAAACTTTAttaatgcataaaaacaaaactatcttAATAATCCCtgtcaataatacatttttaaaatcatatcaaGAAATTGTTATTTTGCCATATATTTCTCACTGCTTTACAGAAATTCAACATTACCTCAATGCTTCTTTTAGAACtcttatttaaagtattttaatacatgtaatggatttgattttgatttatatcCAGGCATCACTAGGATCATAGTGGTGAATTGTGATGTTTTAAACATCTTTGTAACAGCAtttattatgtgtgtgtctatttttaGTATTCAGGTCATTCCATTTGAactccattaaaaaaagcattttttgtattttaaatgatttaatattgATGCAACCCAATTGATGGGTTAGATGGGTTAATGAGAGGACTTGAAACCAAAAGTGAGTCACAAAATTAAGAAGACTGGCCCCTAAGGTTCTTGCTTGTTTAAGGTCACTCTCTCACTTCAggtcaatgaaaatatttagaaaatgtagaTGGTTGTGCAGTGGTCCTCACTGAGCTGTCATTAAATGTCCAATTTGCAAACCTATAAAATTGTTCTGgtcatttaagtaatttgttcaattaaggaaaCTGGTTGTTGAGGACTGATGGATATTCAAGTGTTT

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU451 lncRNA downstream 268074 2405643 ~ 2406084 (-) True G372
TU410 lncRNA downstream 326749 2347062 ~ 2347409 (-) True G345
TU378 lncRNA downstream 587400 2086458 ~ 2086758 (-) True G322
TU362 lncRNA downstream 646808 2026921 ~ 2027350 (-) True G306
TU332 lncRNA downstream 830377 1840798 ~ 1843781 (-) True G279
TU547 lncRNA upstream 279453 3005372 ~ 3005681 (-) True G453
TU557 lncRNA upstream 281049 3006968 ~ 3058204 (-) True G458
TU568 lncRNA upstream 360546 3086465 ~ 3111051 (-) True G464
TU609 lncRNA upstream 469986 3195905 ~ 3211877 (-) True G500
TU653 lncRNA upstream 698169 3424088 ~ 3428291 (-) True G541
AMCG00003426 mRNA downstream 150833 2507558 ~ 2523325 (-) True AMCG00003426
AMCG00003422 mRNA downstream 235597 2427397 ~ 2438561 (-) True AMCG00003422
AMCG00003424 mRNA downstream 258207 2408054 ~ 2415951 (-) True AMCG00003424
AMCG00003423 mRNA downstream 272600 2397776 ~ 2401558 (-) False AMCG00003423
AMCG00003418 mRNA downstream 337098 2330695 ~ 2337060 (-) True AMCG00003418
AMCG00003435 mRNA upstream 487892 3213811 ~ 3217086 (-) True AMCG00003435
AMCG00003437 mRNA upstream 513965 3239884 ~ 3250722 (-) True AMCG00003437
AMCG00003436 mRNA upstream 564118 3290037 ~ 3291227 (-) True AMCG00003436
AMCG00003440 mRNA upstream 672807 3398726 ~ 3400684 (-) True AMCG00003440
AMCG00003439 mRNA upstream 679051 3404970 ~ 3415285 (-) True AMCG00003439
TU462 other downstream 235337 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 272263 2397642 ~ 2401895 (-) False AMCG00003423
TU643 other upstream 668738 3394657 ~ 3430272 (-) True G531
TU920 other upstream 1924852 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 2619920 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 8225257 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 8377407 11103326 ~ 11104672 (-) False AMCG00003595

Expression Profile