RNA id: AMCG00003436


Basic Information

Item Value
RNA id AMCG00003436
length 1191
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00003436
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3290037 ~ 3291227 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCATATGCCTTGAACAGCCTGATTATGATGAATACCAACAATCTGAAAAGTGATAGTAGTCCTCGGACGGCAAGACCAGTGCTGCCCGTGCCAGATCGAAACGCTAACTACTGCCAGCTCCTGGTGAGTGGAGGCCGGTACAGTCCTGGCAGCCTGAGTCCTACCTCCCCCAGGACATCTTTTGTGTTCCCTAGTGGGCCCAACCCAGGCAGCCCAAGAGGCCGATCTCCCACTAGGCAGACGGACACCTTGGGGGTGTCTGTGGGCCAGCGTGTGCGGAGACTGAGCAGCCCCAACCGGGGGAGGTTCAGCGATGACAGCCAGGCACCCAGCACTTGTGGGGAGCTGGGCTGGAAACGGACAGTGCAGATCCCACAAATCCACCGGGAGTTACAGAATGTGGAAGTGAACAAAAAAGTTGGCTTATTCGAAGCCCAGATCTCGGACCTTCGCACCCAGGTGCAGAATTCTGAGATCCTGCGCAGCCCTCGGACCGGCCGTAGGCCTGTATCCCCCTCTGAGCCCGGTGTGGCCACACAGGAGGGTGATAGGAGGTGTCCAGCTTCTCCTCAGTTGCAGGACGGCCTGCCTAGTATCCCCAAGGAGTTTCAAAATGGGAAAGGGTGTAGCAGCTCAGACGGAGGACTGGGGAACTGCAGAAAGGAAAACAGCCTGGGTGACCCAAATAGGGAACAGGGCAGGCAACATGTGAACGAATCAGCAGGAACGTGGAGTAAAGTAGACAGTTCAGCCAGCAGTCATTCTCCTAGTTCACTGGGGGTTGGCAAGAACTTGGCAGCGACAGAGCCAGCAGCAGGGACCAAGCCTTGCTTGACGAAGGAAGGAGCCGAGCCAACGGAAACCCAGCAGCAAGCTGCCGCCTCTGCTTTAGGTGAAGGGAGCTGCCCAGAGGTGGGGAACATCCCCTCTGTCATTATCACGGACCACGGCATGGAGGCTTCGGGGGAAGGGGCCGACTTGCAGCCCAGCCCTAACTCCACCAGAGCAGCGAGGAAGCTCTCTTCTTCCTCCAACTCTTCCACTGGCTTCTCCTCCTCCTGGGAGGAATCTGAGGAAGATATCTCCAGCGACCCTGAGCGTGGAGACGGGCAGTCATCTGCTTTCCTGCAGGCTGGACAAGGCAGAGCGGTGAgtcttattatttatgttttcttcatGCGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609 lncRNA downstream 78160 3195905 ~ 3211877 (-) True G500
TU568 lncRNA downstream 178986 3086465 ~ 3111051 (-) True G464
TU557 lncRNA downstream 231833 3006968 ~ 3058204 (-) True G458
TU547 lncRNA downstream 284356 3005372 ~ 3005681 (-) True G453
TU451 lncRNA downstream 883953 2405643 ~ 2406084 (-) True G372
TU653 lncRNA upstream 132861 3424088 ~ 3428291 (-) True G541
TU697 lncRNA upstream 232797 3524024 ~ 3525095 (-) True G578
TU698 lncRNA upstream 245542 3536769 ~ 3537887 (-) False AMCG00003444
TU706 lncRNA upstream 305694 3596921 ~ 3599589 (-) True G586
TU746 lncRNA upstream 571770 3862997 ~ 3865429 (-) True G624
AMCG00003437 mRNA downstream 39315 3239884 ~ 3250722 (-) True AMCG00003437
AMCG00003435 mRNA downstream 72951 3213811 ~ 3217086 (-) True AMCG00003435
AMCG00003431 mRNA downstream 564118 2674158 ~ 2725919 (-) True AMCG00003431
AMCG00003426 mRNA downstream 766712 2507558 ~ 2523325 (-) True AMCG00003426
AMCG00003422 mRNA downstream 851476 2427397 ~ 2438561 (-) True AMCG00003422
AMCG00003440 mRNA upstream 107499 3398726 ~ 3400684 (-) True AMCG00003440
AMCG00003439 mRNA upstream 113743 3404970 ~ 3415285 (-) True AMCG00003439
AMCG00003443 mRNA upstream 175575 3466802 ~ 3536015 (-) True AMCG00003443
AMCG00003444 mRNA upstream 244945 3536172 ~ 3538967 (-) True AMCG00003444
AMCG00003449 mRNA upstream 417886 3709113 ~ 3714240 (-) True AMCG00003449
TU462 other downstream 851216 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 888142 2397642 ~ 2401895 (-) False AMCG00003423
TU643 other upstream 103430 3394657 ~ 3430272 (-) True G531
TU920 other upstream 1359544 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 2054612 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 7659949 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 7812099 11103326 ~ 11104672 (-) False AMCG00003595

Expression Profile