RNA id: AMCG00003451


Basic Information

Item Value
RNA id AMCG00003451
length 477
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00003451
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3853147 ~ 3855295 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTACCTGGAGTCACAGCACATTATCCACAGAGACCTGCGGGCAGATAACATTCTGCTCACTGAAATGAAGTCCTGCAAGATCGCTGATTTTGGGCTGGCACAGTACACTTTTACTGGAGATCAGAAAGTCAAGATGGATGGGAAAGTTCCAGTGAAGTGGATGGCTCCTGAGATTTTCAGTGGAGAAGAATATACTATTAAATGTGATGTCTGGTCCTTTGGGATTCTCTTAACAGAAATTGTCACATTTGGGGAGGAGCCATATCCAGATCTGGACAAAATATCCTGCATAAAAGCTGTGCTGCAGGGCCATCATATGTCCCAACCTGAAGGATGCCCCCCATCTCTCTATGACATCATGTTACGCTGCTGGAGACCAAACTCTTTGGAGAGACCTTGGTTTAGGGAACTGCAGGCCATGCTGACAGCACTCATCCAGGACACAGAGGAGACCATACCAGAGCTGGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU706 lncRNA downstream 253558 3596921 ~ 3599589 (-) True G586
TU698 lncRNA downstream 315260 3536769 ~ 3537887 (-) False AMCG00003444
TU697 lncRNA downstream 328052 3524024 ~ 3525095 (-) True G578
TU653 lncRNA downstream 424856 3424088 ~ 3428291 (-) True G541
TU609 lncRNA downstream 641270 3195905 ~ 3211877 (-) True G500
TU746 lncRNA upstream 7702 3862997 ~ 3865429 (-) True G624
TU764 lncRNA upstream 38629 3893924 ~ 3895512 (-) False AMCG00003459
TU799 lncRNA upstream 65701 3920996 ~ 3974710 (-) True G664
TU804 lncRNA upstream 120462 3975757 ~ 3975989 (-) True G667
TU850 lncRNA upstream 426530 4281825 ~ 4316284 (-) True G707
AMCG00003449 mRNA downstream 138907 3709113 ~ 3714240 (-) True AMCG00003449
AMCG00003444 mRNA downstream 314180 3536172 ~ 3538967 (-) True AMCG00003444
AMCG00003443 mRNA downstream 317132 3466802 ~ 3536015 (-) True AMCG00003443
AMCG00003439 mRNA downstream 437862 3404970 ~ 3415285 (-) True AMCG00003439
AMCG00003440 mRNA downstream 452463 3398726 ~ 3400684 (-) True AMCG00003440
AMCG00003459 mRNA upstream 20937 3876232 ~ 3895524 (-) True AMCG00003459
AMCG00003461 mRNA upstream 236797 4092092 ~ 4120379 (-) True AMCG00003461
AMCG00003464 mRNA upstream 354452 4209747 ~ 4211902 (-) True AMCG00003464
AMCG00003460 mRNA upstream 362874 4218169 ~ 4235652 (-) True AMCG00003460
AMCG00003462 mRNA upstream 444610 4299905 ~ 4323978 (-) True AMCG00003462
TU643 other downstream 422875 3394657 ~ 3430272 (-) True G531
TU462 other downstream 1414326 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 1451252 2397642 ~ 2401895 (-) False AMCG00003423
TU920 other upstream 795476 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 1490544 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 7095881 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 7248031 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 8068513 11923808 ~ 11939783 (-) True AMCG00003623

Expression Profile