RNA id: AMCG00003459



Basic Information


Item Value
RNA id AMCG00003459
length 2740
RNA type mRNA
GC content 0.44
exon number 18
gene id AMCG00003459
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3876232 ~ 3895524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTGGCTGCCATTAGCTGTGGAAGTGAGATACGTTACCACACTTCCGgtccaaaacaaaaagaaaatacacacagcGGGATACAGCAAGGCCTCAGTAACTCAGAAAAATGTCAGGGTCATGGAAGCACTGCCATTCCATTGAAACAGCAGACATCGAAATGTGGCAGCTAGCTGGTTATGAAGCCTCTCTTTCGCTCACTGAGAAGTCTAACCCAATCACCAGAGAGATTGACACAGCTGACCCTCTACAGATTGTTCACCTGTTACAGATGTGTGATGCAGAAATATTCCAGGAGGAAAGGAGGGAAGGAAAGACTATCGTAGACTACCAGGTAGGATGTGCACGAGGAGCTGGAGTTGCACTCAGGAGCAGGAAAGCCAAAGCATATTGATTGGACCCAGAGCACAGCCTGGTCCTGCTGAGTGGCTGTGGCACATCTGGACGGCTTGCATTCCTATTAGCGACGTCCTTTAACAGGCTGTTGAAAGCCCTGCAGAGAAAACAGAACTATGCCTACATGATTGCCGGAGGAGACAAGGCTCTTTTGACTTCACAGGAAGATGCTGAAGACAACCCTCATCTGGGGGCTGAGGAGCTCGGCAAGTTGTGTGCAGGAAAGAAGCAAGTCGTCTTTATTGGGATATCATGTGGATTATCGGCTCCCTTTATTGCTGGTCAGCTGGATTTCTGCATGGACAACCTGGATGTCTTCACACCAGTGCTGCTTGGCTTTAACCCAGTGACCACCGCCAGgaatgagGTCATTGAAGGCTGGCATCTGAGCTTCTGCCAGGTAGCGAAACGGATGCAGGATCTGCAGAAAACCCACAGAGCTTTCATCTTGAACCCTGCAGTGGGACCTGAAGCCATCAGTGGCTCTTCCCGTATGAAAGGGGGGAGCGCAACAAAAATCATCCTCGAGACACTATTCCTGACTGCCCACAGAGCTGCCTTCAGCCACAAAGAGATCACAGCTGAGGTGGTTTTGGAAGGGCTGAGAACTTATGAAAGAGTTCATAAAAGTACCTACTCTCAGAATAACAAAATAGCAGCCTTGGTAAAGCAAGCAGGAAGAAGtttgcagAAAAGGGGACATGTGTATTACATAGGCTGGAAGACTTTAGGAGTAATGGGGATTATCGATGCCAGTGAATGCATACCCACTTTTGGAGCAGATGCCAGTGACATCTGTGGATTTATCAACAATGGGTATAGAGAAATGGAGAACAAGGAAGGGGATATAACATCAcaaGGTCCACAGTTCTGTATTTCCCATGAAGATTTTGTGAAGAACATTCTTCCCCATGTTACAGACAATGACacaatacttttcatttttacactGGATGATGACCTTTCTGAAATTGAAGAACTGGCAAACCAAACAACAGAGAAATCTTCGAATCTTCATGCAGTCGCCCATACGACTACGGGACACTTTATTTCTgAAAATCTTAAAAAATCATTTGCTTCAGTCATAAGCATTACATGGCCTGTTGTGTTCTCTGAATTTGAAGGCTGTTTTCTACAgAAACTCCAGAGGGAACTGTCTACAAAATGGATATTGAATGCAATCAGTAGCGGTGGCCACATCTTGAAAGGAAAAATTTACAACAACTACATGATGGACCTCAAAGTCAGCAACACCAAGCTGTACAGGAGAGCCCTGGCGATTCTCCAGAAGTTCACGGGTCATTCCCACCCAGAGTGTCAGGAGGCCCTTCTCCAGGCGATCTATGACACCCAGGATCTCAGCGATGACATCAGAAATGCAGAGGTGGTGCCAACTGCAGTGGTGATCTTGACCCGGAAGTGCTCCCTTGCTGAAGCCAAGTCCAGGCTGGATGCCACTTCAGTGATAAGAGATGCGATAGAGGCCTGCTTGGTTGCACCAGGATGGAAACGGGTTGGCCAAATCACAGCTGGAGAATTAGAGGGGAATGAATGAGGAAGACTACCCAACAGGTTGCCGCTTAGTCTTGAtatgcaagaaataaaaactgagGGTCTTGAAAAGTGTGTTTGATGGCTTCCATCACTGTCCTGTAGAAGGGTGCAACCCTGAGAGCCCTGCCTGAGGAGGAAGAACACTGACGCATCGCCAAACCACCCCCTGTAATTCAGCCAGCAATGAGATGTGATTGTAACAATGTTTCACTTTGACATTCATCTCTGGGGGGcatagaaatgcatttaaagaataaagagaccacatttgttttggaaacaaCAAATCTGATTTAGagataaaactgcaaaaataaaataagacaagGCTGCAATAAACCATTATTATGTACTTAATCTCAGGAGTTATTGATATAATAGAGTAAAACACCCTGTGTACTTCTTCCTtatgacagaaagaaagaaaaagaaagagttATGCTGTAAATCAGCTCTTGGCTTTACTTTGTTTCTAGAGGAAACATTGCCCTCCTCTGGTGTGATTTCTGCTATTGCAAGAAGGGGATGAGTATTTGCACCTGTTACAACTTTCTCCAACAAATCGGACACACTAAACACATATACTATATATGATAACTATTTATTAAACAGTATTTACTAATTTGTGGATAATATTGATGGATGTAAAGGCTGCTAATACATTTGTCTGCATCTGTCCCTcactacatatatattctgCATTTACAGGGGACCTTTTCAAGTACAAGGAGCTCTCACTTAACACGATACATGTGTTCCTGAAAATGTGTAAAGAAACGTGTATattcagta

Function


GO: NA

KEGG:

id description
ko04950 Maturity onset diabetes of the young

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU746 lncRNA downstream 10803 3862997 ~ 3865429 (-) True G624
TU706 lncRNA downstream 276643 3596921 ~ 3599589 (-) True G586
TU698 lncRNA downstream 338345 3536769 ~ 3537887 (-) False AMCG00003444
TU697 lncRNA downstream 351137 3524024 ~ 3525095 (-) True G578
TU653 lncRNA downstream 447941 3424088 ~ 3428291 (-) True G541
TU799 lncRNA upstream 25472 3920996 ~ 3974710 (-) True G664
TU804 lncRNA upstream 80233 3975757 ~ 3975989 (-) True G667
TU850 lncRNA upstream 386301 4281825 ~ 4316284 (-) True G707
TU851 lncRNA upstream 386625 4282149 ~ 4326850 (-) True G708
TU890 lncRNA upstream 587992 4483516 ~ 4485565 (-) True G743
AMCG00003451 mRNA downstream 20937 3853147 ~ 3855295 (-) True AMCG00003451
AMCG00003449 mRNA downstream 161992 3709113 ~ 3714240 (-) True AMCG00003449
AMCG00003444 mRNA downstream 337265 3536172 ~ 3538967 (-) True AMCG00003444
AMCG00003443 mRNA downstream 340217 3466802 ~ 3536015 (-) True AMCG00003443
AMCG00003439 mRNA downstream 460947 3404970 ~ 3415285 (-) True AMCG00003439
AMCG00003461 mRNA upstream 196568 4092092 ~ 4120379 (-) True AMCG00003461
AMCG00003464 mRNA upstream 314223 4209747 ~ 4211902 (-) True AMCG00003464
AMCG00003460 mRNA upstream 322645 4218169 ~ 4235652 (-) True AMCG00003460
AMCG00003462 mRNA upstream 404381 4299905 ~ 4323978 (-) True AMCG00003462
AMCG00003466 mRNA upstream 481368 4376892 ~ 4404642 (-) True AMCG00003466
TU643 other downstream 445960 3394657 ~ 3430272 (-) True G531
TU462 other downstream 1437411 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 1474337 2397642 ~ 2401895 (-) False AMCG00003423
TU920 other upstream 755247 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 1450315 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 7055652 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 7207802 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 8028284 11923808 ~ 11939783 (-) True AMCG00003623

Expression Profile