RNA id: TU764



Basic Information


Item Value
RNA id TU764
length 368
lncRNA type sense_over
GC content 0.48
exon number 2
gene id AMCG00003459
representative False

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3876232 ~ 3895524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCTGTGGAAGTGAGATACGTTACCACACTTCCGgtccaaaacaaaaagaaaatacacacagcGGGATACAGCAAGGCCTCAGTAACTCAGAAAAATGTCAGGGTCATGGAAGCACTGCCATTCCATTGAAACAGCAGACATCGAAATGTGGCAGCTGGTTATGAAGCCTCTCTTTCGCTCACTGAGAAGTCTAACCCAATCACCAGAGAGATTGACACAGCTGACCCTCTACAGATTGTTCACCTGTTACAGATGTGTGATGCAGAAATATTCCAGGAGGAAAGGAGGGAAGGAAAGACTATCGTAGACTACCAGGTAGGATGTGCACGAGGAGCTGGAGTTGCACTCAGGAGCAGGAAAGCCAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU746 lncRNA downstream 28495 3862997 ~ 3865429 (-) True G624
TU706 lncRNA downstream 294335 3596921 ~ 3599589 (-) True G586
TU698 lncRNA downstream 356037 3536769 ~ 3537887 (-) False AMCG00003444
TU697 lncRNA downstream 368829 3524024 ~ 3525095 (-) True G578
TU653 lncRNA downstream 465633 3424088 ~ 3428291 (-) True G541
TU799 lncRNA upstream 25484 3920996 ~ 3974710 (-) True G664
TU804 lncRNA upstream 80245 3975757 ~ 3975989 (-) True G667
TU850 lncRNA upstream 386313 4281825 ~ 4316284 (-) True G707
TU851 lncRNA upstream 386637 4282149 ~ 4326850 (-) True G708
TU890 lncRNA upstream 588004 4483516 ~ 4485565 (-) True G743
AMCG00003451 mRNA downstream 38629 3853147 ~ 3855295 (-) True AMCG00003451
AMCG00003449 mRNA downstream 179684 3709113 ~ 3714240 (-) True AMCG00003449
AMCG00003444 mRNA downstream 354957 3536172 ~ 3538967 (-) True AMCG00003444
AMCG00003443 mRNA downstream 357909 3466802 ~ 3536015 (-) True AMCG00003443
AMCG00003439 mRNA downstream 478639 3404970 ~ 3415285 (-) True AMCG00003439
AMCG00003461 mRNA upstream 196580 4092092 ~ 4120379 (-) True AMCG00003461
AMCG00003464 mRNA upstream 314235 4209747 ~ 4211902 (-) True AMCG00003464
AMCG00003460 mRNA upstream 322657 4218169 ~ 4235652 (-) True AMCG00003460
AMCG00003462 mRNA upstream 404393 4299905 ~ 4323978 (-) True AMCG00003462
AMCG00003466 mRNA upstream 481380 4376892 ~ 4404642 (-) True AMCG00003466
TU643 other downstream 463652 3394657 ~ 3430272 (-) True G531
TU462 other downstream 1455103 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 1492029 2397642 ~ 2401895 (-) False AMCG00003423
TU920 other upstream 755259 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 1450327 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 7055664 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 7207814 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 8028296 11923808 ~ 11939783 (-) True AMCG00003623

Expression Profile