RNA id: AMCG00003461


Basic Information

Item Value
RNA id AMCG00003461
length 1435
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00003461
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4092092 ~ 4120379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTGCCAGAGAACTGGACGGACACAAAAGAGACCCTGTTGGAAGGCATGGTGTTCAACGTCAAGTACCTGGGTATGACCCTCGTGGAGCAGCCCAAGGGAGAAGAGATGGCATCGGCAGCCATCAGAAGGATAGTTTCCATGGGAATCATCTTGACAGACTCGGAAACAAATGAACTAATTGAAAACGTCTCCATATACAGaaTTTCCTACTGCACTGCAGACAAAGCTCAGGACAAGGTGTTTGCCTATGTTGCTCAGAGCCAGTTTAATGAGACGCTGGAATGCCATGCTTTTCTGTGCCCCAAAAAGAAGATCgcTCAGGCTGTGACGCTGACCGTTGCCCAGGCCTTCAAAGTGGCTCTGGATCTGTGGGAACTTGCTCAAGAAGACAAAAGCAAGAAAGTGCATCCGTGCTGCTCCTGCGCAGGAACAGAATCCAAGAGTGAACTGAAAAGCCACTGTGTTTCAGACCCTGAAATTAACAGAGGTCTAAGTAAAGAAGAAAACTTAAGGAAGCCATTTTTCTCTTCTTCGTTTCACACCACGTCACAGCACAACAGCCCTGTCCGGCGACCACCAATCAAACATGACTCATGGGATGTAGAAGATGGGCTAGATGATGCTTTCTCAAGACTGGCGGAGTCCCGGACCGGAGCGCAGTCTTAGGATGCAGCTCTGAAAACCTGCGGTGCCAATCGGACTAGCAAAGCAGCCATCTTGGAAACACGGACATGTCCCAGTGAAACACACGTGGACTTCTGAAATACAGGGACTCCGGTTTCTTTCAGTGGAAGGAAATGTCTTCGTTTCACGCAAGCAGTCGTCTCAATTACTCACGTCATCCAGGGTACAGGGATGTGGATTGGCACCATTTCTGGAACTGTCTCGCCCAAAACAAAGATCCCTCCAGTATTTTGTCTACATCTTCTACTAAACCATGGGATAAAAGGCACTGAATCAAAATACCTGAGGTATATGCGATGTTTGACTTTGTATTTACAATGTGTTTGCTTTTAGTTGTTATCTGTCATGAAAGCAATGCTGGGATCCATTACAATAATGTAGACCATCTAAATTGTGCCTCTTTTAGttgtacattaatttatttaattggtgCTTCCTCTTAAAAACAAAGGAATCTATTTGCAAGATTTCCTACTGTATTCTATGAAGCAGATTGTGATATGTTTGCCCCTTTGgtgcatttaatttaacatttttataatcaGCCATTGGACATTGTAGAGAAAATCAGTTTTCTGTGAAATGTACAGgatcttttagtttttcttaggAGATGCACATCAAATGTATCAATGTCTTGTTGCAGgggccattttgttttccattagtTTAACGCACCAAATGTCCAACCCAACAAACAATTGAATTGATGCATAGTCacaattaattcatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU804 lncRNA downstream 116103 3975757 ~ 3975989 (-) True G667
TU799 lncRNA downstream 117382 3920996 ~ 3974710 (-) True G664
TU764 lncRNA downstream 196580 3893924 ~ 3895512 (-) False AMCG00003459
TU746 lncRNA downstream 226663 3862997 ~ 3865429 (-) True G624
TU706 lncRNA downstream 492503 3596921 ~ 3599589 (-) True G586
TU850 lncRNA upstream 161446 4281825 ~ 4316284 (-) True G707
TU851 lncRNA upstream 161770 4282149 ~ 4326850 (-) True G708
TU890 lncRNA upstream 363137 4483516 ~ 4485565 (-) True G743
TU891 lncRNA upstream 365228 4485607 ~ 4486026 (-) True G744
TU896 lncRNA upstream 400436 4520815 ~ 4521017 (-) True G748
AMCG00003459 mRNA downstream 196568 3876232 ~ 3895524 (-) True AMCG00003459
AMCG00003451 mRNA downstream 236797 3853147 ~ 3855295 (-) True AMCG00003451
AMCG00003449 mRNA downstream 377852 3709113 ~ 3714240 (-) True AMCG00003449
AMCG00003444 mRNA downstream 553125 3536172 ~ 3538967 (-) True AMCG00003444
AMCG00003443 mRNA downstream 556077 3466802 ~ 3536015 (-) True AMCG00003443
AMCG00003464 mRNA upstream 89368 4209747 ~ 4211902 (-) True AMCG00003464
AMCG00003460 mRNA upstream 97790 4218169 ~ 4235652 (-) True AMCG00003460
AMCG00003462 mRNA upstream 179526 4299905 ~ 4323978 (-) True AMCG00003462
AMCG00003466 mRNA upstream 256513 4376892 ~ 4404642 (-) True AMCG00003466
AMCG00003470 mRNA upstream 401169 4521548 ~ 4522998 (-) True AMCG00003470
TU643 other downstream 661820 3394657 ~ 3430272 (-) True G531
TU462 other downstream 1653271 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 1690197 2397642 ~ 2401895 (-) False AMCG00003423
TU920 other upstream 530392 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 1225460 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 6830797 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 6982947 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 7803429 11923808 ~ 11939783 (-) True AMCG00003623

Expression Profile