RNA id: AMCG00003469



Basic Information


Item Value
RNA id AMCG00003469
length 664
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00003469
representative False

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4514031 ~ 4522400 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGAAAATGGTGTGACCACCATGTGCATATGATGCAATGTAGAACATAAACCCAAGGACATTGAGATACTCCATTTATAGACAGCCCAAAAGTGCCTTTCATGCAAGGGaattaaaacatgttctgaAAGTCTCTGCAACGTGAGAGAGAAGTCATTACCTCCTCAGGACTTTAAACCACAGAAACGGACCCAAGTGCTTCCAACCCCAATGGGGCAGCGCAATTCTCAACCACAGCTTTTTCCTGGAGACATCATCGAGTTTCCACGGTCAAAGCATTTTTCTCACTTTGGGATTTattatggagagagagatggagttCCCTACGTGGCACACTTGACATCTCGAGactcagaTTCAAAGATCCTTCTCTTCGGCAGGGCCCTGAAGTCCACAGTGAGAATTGACCCGGTAGACGTCGTAGGGAAGAAATATAAAGTTAGTAACTACTTGGATGACAACCACACACCCCGAGATTTTTACACACTTATCAAACCTGAGATCGACGAGGCCATGGGCAAGATGGTCACGTACGACATCCTCTTCCACAACTGTGAGCACCAAGCCACGCTCTACCGCTACGGGGTCAAGAAATCAGTGCAGCCAGGACAGGAGGAACCAGGACAGGAGGAACCAGGACAGGAGGAACCACGACAGAGGGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU889 lncRNA upstream 29761 4483890 ~ 4484270 (+) True G742
TU878 lncRNA upstream 58889 4452564 ~ 4455142 (+) True AMCG00003473
TU830 lncRNA upstream 134212 4326653 ~ 4379819 (+) True G690
TU824 lncRNA upstream 139092 4296559 ~ 4374939 (+) True G684
TU778 lncRNA upstream 423712 4086896 ~ 4090319 (+) True G646
TU905 lncRNA downstream 30498 4552898 ~ 4553645 (+) True G752
TU992 lncRNA downstream 810109 5332509 ~ 5334752 (+) False AMCG00003480
TU1087 lncRNA downstream 1028345 5550745 ~ 5556306 (+) True G907
TU1088 lncRNA downstream 1035207 5557607 ~ 5558515 (+) True G908
TU1140 lncRNA downstream 1307059 5829459 ~ 5829745 (+) True G960
AMCG00003474 mRNA upstream 42300 4471337 ~ 4471731 (+) True AMCG00003474
AMCG00003473 mRNA upstream 60478 4452949 ~ 4453553 (+) False AMCG00003473
AMCG00003467 mRNA upstream 78564 4427711 ~ 4435467 (+) True AMCG00003467
AMCG00003465 mRNA upstream 147799 4350519 ~ 4366232 (+) True AMCG00003465
AMCG00003463 mRNA upstream 224083 4280112 ~ 4289948 (+) True AMCG00003463
AMCG00003468 mRNA downstream 19243 4541643 ~ 4543761 (+) True AMCG00003468
AMCG00003475 mRNA downstream 167084 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003478 mRNA downstream 652615 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003480 mRNA downstream 781050 5303450 ~ 5334288 (+) True AMCG00003480
AMCG00003481 mRNA downstream 813091 5335491 ~ 5339847 (+) True AMCG00003481
TU1202 other downstream 1965292 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 4126725 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 4733428 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 5255108 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 6967785 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile