RNA id: TU893


Basic Information

Item Value
RNA id TU893
length 1758
lncRNA type sense_over
GC content 0.52
exon number 4
gene id AMCG00003469
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4514031 ~ 4522400 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgccttattaaaacaaaagaccCCCGAGAGACGAAAGGGAAATCCCCAGCCACCTCTCAATTCAGGCATCAGTGTTCACTTCCTCTTCTACATATTTCAAGTCTCTGCAACGTGAGAGAGAAGTCATTACCTCCTCAGGACTTTAAACCACAGAAACGGACCCAAGTGCTTCCAACCCCAATGGGGCAGCGCAATTCTCAACCACAGCTTTTTCCTGGAGACATCATCGAGTTTCCACGGTCAAAGCATTTTTCTCACTTTGGGATTTattatggagagagagatggagttCCCTACGTGGCACACTTGACATCTCGAGGGCCCTGAAGTCCACAGTGAGAATTGACCCGGTAGACGTCGTAGGGAAGAAATATAAAGTTAGTAACTACTTGGATGACAACCACACACCCCGAGATTTTTACACACTTATCAAACCTGAGATCGACGAGGCCATGGGCAAGATGGTCACGTACGACATCCTCTTCCACAACTGTGAGCACCAAGCCACGCTCTACCGCTACGGGGTCAAGAAATCAGTGCAGattgaaaaaatctacaaaaaaatattgcCCACCTGGCAAGAACtctttgagaagaaaaaactgTAGAAAAGAAATGACAGatgaatgaaaaattattattattaatagaagaAACAGAAGGAGATGCAAGCCTGGTATACATTTCCCTTGTTGTTGAATCTTTAAAATcgaaattgattattttattatgatttttaaaaataatataatattgtaataaagGTTTCTTATAGAGAGTCAATGGAATATTCTACCATTGTACCATAGTAACATTGTAaaggattttatatataatactgtaatattgAGCCTACATAAAATCCCTTTCATTTTTACTTAATGGCAGATTATATGATTGATCCTCTGTCAGAAacctttctgaaaatgtttgttttagacCTACAGACAAAGGTTAGTGCCAATTATACACAAGTGTTGCCATCTGacagtaacaaaaacaattaagggCTAgactaagggccggattaattcaaaaccttgacccacccgctaatagcaaacttcaaacctgtacatcatagctgttacttttatgattagaagaaaaatggcttcttactaaaaatgcagctgaAACCGAGTATAGTTCTTTAGTTTTTGAATAGCAGTTGGGTtaaagttttgctttaatcccagcctaagaCTTAagactttgacctacctgctaATAAAAATGACTAACTGGTACCCttagtttttttcattcatatttttatgaaatatgtttttgtttttaaatgtgtgtgtgtttgtgaattaaTGAAGGATGTGCTGTATACTGTAAGCTATTTTCACTACTATTGAAGTTATGTCCATGATGCTGGAATTCATCTGACTGCCCTCAAATGTTTGTGACAGTTAAGCTTTTGTAATTGTAACTAACAACACTGCATTCAGTAGTTTAGACCACTGCattatacttttataaatgtgtatttgtgaaCCTCTAATTGTCCTGTTATTTCAATTCTAAGTGCATATCGTGTGCTTTTCCTTGTGAAGaaaaatccacaaaataaacaaagattgACAACTTGCAAGGAATGAGAATTTCAGAACTCAATCTCACTTTGCAGcacttaatatatttattttgaattatagaCATTATATTCAATAATTGAAGTTTCTCCATTATCAGAAGAAAAACTAGATACACATTTCTTAACCAGATAAAATGCTTTACTTTtatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU889 lncRNA upstream 31078 4483890 ~ 4484270 (+) True G742
TU878 lncRNA upstream 60206 4452564 ~ 4455142 (+) True AMCG00003473
TU830 lncRNA upstream 135529 4326653 ~ 4379819 (+) True G690
TU824 lncRNA upstream 140409 4296559 ~ 4374939 (+) True G684
TU778 lncRNA upstream 425029 4086896 ~ 4090319 (+) True G646
TU905 lncRNA downstream 32265 4552898 ~ 4553645 (+) True G752
TU992 lncRNA downstream 811876 5332509 ~ 5334752 (+) False AMCG00003480
TU1087 lncRNA downstream 1030112 5550745 ~ 5556306 (+) True G907
TU1088 lncRNA downstream 1036974 5557607 ~ 5558515 (+) True G908
TU1140 lncRNA downstream 1308826 5829459 ~ 5829745 (+) True G960
AMCG00003474 mRNA upstream 43617 4471337 ~ 4471731 (+) True AMCG00003474
AMCG00003473 mRNA upstream 61795 4452949 ~ 4453553 (+) False AMCG00003473
AMCG00003467 mRNA upstream 79881 4427711 ~ 4435467 (+) True AMCG00003467
AMCG00003465 mRNA upstream 149116 4350519 ~ 4366232 (+) True AMCG00003465
AMCG00003463 mRNA upstream 225400 4280112 ~ 4289948 (+) True AMCG00003463
AMCG00003468 mRNA downstream 21010 4541643 ~ 4543761 (+) True AMCG00003468
AMCG00003475 mRNA downstream 168851 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003478 mRNA downstream 654382 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003480 mRNA downstream 782817 5303450 ~ 5334288 (+) True AMCG00003480
AMCG00003481 mRNA downstream 814858 5335491 ~ 5339847 (+) True AMCG00003481
TU1202 other downstream 1967059 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 4128492 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 4735195 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 5256875 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 6969552 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile