RNA id: AMCG00003472


Basic Information

Item Value
RNA id AMCG00003472
length 471
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00003472
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4547613 ~ 4553234 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTGTGGAGGCAGCAGAACAGACGCTCTTGAACCCAGATACTTGGAGAGCTGGACTAAGGAGACCGAGTCTACCTGGCTGACCAGCACAGATGCAGACATACCTCTCTCATCTATTCAGAACATCCCGTCGGATCACTCCTCGGAGTCAGGCTTCATGGCTGAGAAAAACACCATCCACTCCGTTGCAGATTTGTTCGATGATGCCCTTCCAGCTCCAGCGCAGGCCTACCTGAAAGTCTGTTCTGCCATTTCTGACCCTAGTCTGAATGAGGTCAAGCCCAGCAGTGGCAATGCAACAAAGTGGCAAGCCAACAGGATGTCAACGAAGCAGGTGACCATCACAGTCACGCAGAGCATCCGGCAGGTAGACAAGACGGGGAAGGTGAAGGAGAAGTCCCACACCACTGTGGAGGTCGTGAAGCCTGTTGAGCAGCACAAGGAAGAGGAACCAAGTGACAACATGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU915 lncRNA downstream 315 4545898 ~ 4547298 (-) True G762
TU896 lncRNA downstream 26596 4520815 ~ 4521017 (-) True G748
TU891 lncRNA downstream 61587 4485607 ~ 4486026 (-) True G744
TU890 lncRNA downstream 62048 4483516 ~ 4485565 (-) True G743
TU851 lncRNA downstream 220763 4282149 ~ 4326850 (-) True G708
TU933 lncRNA upstream 226612 4779846 ~ 4783376 (-) True G777
TU944 lncRNA upstream 428785 4982019 ~ 4982220 (-) True G786
TU962 lncRNA upstream 578233 5131467 ~ 5131701 (-) True G804
TU969 lncRNA upstream 579466 5132700 ~ 5140245 (-) True G811
TU1008 lncRNA upstream 776338 5329572 ~ 5329774 (-) True G844
AMCG00003470 mRNA downstream 24615 4521548 ~ 4522998 (-) True AMCG00003470
AMCG00003466 mRNA downstream 142971 4376892 ~ 4404642 (-) True AMCG00003466
AMCG00003462 mRNA downstream 223635 4299905 ~ 4323978 (-) True AMCG00003462
AMCG00003460 mRNA downstream 311961 4218169 ~ 4235652 (-) True AMCG00003460
AMCG00003464 mRNA downstream 335711 4209747 ~ 4211902 (-) True AMCG00003464
AMCG00003471 mRNA upstream 9167 4562401 ~ 4565560 (-) True AMCG00003471
AMCG00003476 mRNA upstream 29908 4583142 ~ 4808989 (-) True AMCG00003476
AMCG00003477 mRNA upstream 326586 4879820 ~ 5154595 (-) True AMCG00003477
AMCG00003479 mRNA upstream 637315 5190549 ~ 5225471 (-) True AMCG00003479
AMCG00003484 mRNA upstream 790836 5344070 ~ 5356468 (-) False AMCG00003484
TU643 other downstream 1117341 3394657 ~ 3430272 (-) True G531
TU462 other downstream 2108792 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 2145718 2397642 ~ 2401895 (-) False AMCG00003423
TU920 other upstream 97537 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 792605 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 6397942 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 6550092 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 7370574 11923808 ~ 11939783 (-) True AMCG00003623

Expression Profile