RNA id: AMCG00003476


Basic Information

Item Value
RNA id AMCG00003476
length 1149
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00003476
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4583142 ~ 4808989 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAATCCTGAGATGTATAGGAGAGAGAGCTCCAGGAGTGGGTCAGGAGTAGGCTGTGACAGGCCCTGGCGCTATGCTGTGGTGATGTCCTTCCTCTACCCCTTCATGGAGGCCTGGCCCACCAGTGGCAACATGCTTACAGGGGTCGAGGAGGACCAGCCAGCCAGCACGAGCCAGAGGCAGATGGAGGGGGATGATGACGCCGCCGAGACCAGGGAGGCTTTTCTTTGCAAGAAAATCATTACCTCTGCTCTGGCCCTGCTGACTGACACTCAGGTTGGGGAGAGCGCGCCCCTGTCCACCCCACACCCAGCCCAGCAGCTGCCTCCTGCTCGAGCACACGCCTGTGCGCTGGACCGGTCGGCCCGTGGGAGCGGGTCATGCAGCTCGGCCAGCCACAGCGCGGTCACTGCGCCCTCCCCGCAGCTGCTCAGGGCTGTGGTGGAGAGACTGGTGCAGGGAAAGGCAGGGTACAGGTTTCAAAACTGGGCCCAGACCTACAGCTCCTGTCCTGAGAAGTACTTCCAGCCCAGCAGTGTGGAGGATGTCAGACAGATTTTAGCAATGGCCAGGCAGAGCAGCAAACGAGTGAAGGTGGTGGGAGGGGGGCACTCTCCCTCTGACATTGCCTGCACGGATGAATTCATGATCAGCTTGGACAAGATGAACAGGGTTCTTGAGGTGAATAAAGAGGAGAGACGAGTCACTGTGGAAGCGGGGATCTTTCTGTGTGATCTGAATGAAGAATTGACCAAACATGGCCTTGCCCTCTCAAATTTGGGCGCTGTGGCGGAGGTGGCGGCCGCTGGGGTAATTGGAACTGGCACCCACAACACGGGCATCGACCATGGCATTCTGCCCACGCAGGTTGTCTCTCTGAGTCTAATGACGGCCGTTGGGGAGGTGCTTCACTGCTCAGACTCGGTGAACCAGGACATCTTCCAGGCTGCCAGGCTCCACCTAGGCTCTCTAGGGGTCATCCTCACCCTAACCTACCAGTGCCAGCCAGCCTTCCGCCTCCACGAGCGCCAGTTCCCCTCCACACTCACAGAGACTGCTATTGCCATGATTACGGCACTGCAAGATCGCTGTGAGGGAATATCAGCAACTTTGAAAACACTTGAAAaagtgatggtgatgatatga

Function

GO: NA

KEGG:

id description
K00107 ALO; D-arabinono-1,4-lactone oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU915 lncRNA downstream 35844 4545898 ~ 4547298 (-) True G762
TU896 lncRNA downstream 62125 4520815 ~ 4521017 (-) True G748
TU891 lncRNA downstream 97116 4485607 ~ 4486026 (-) True G744
TU890 lncRNA downstream 97577 4483516 ~ 4485565 (-) True G743
TU851 lncRNA downstream 256292 4282149 ~ 4326850 (-) True G708
TU944 lncRNA upstream 173030 4982019 ~ 4982220 (-) True G786
TU962 lncRNA upstream 322478 5131467 ~ 5131701 (-) True G804
TU969 lncRNA upstream 323711 5132700 ~ 5140245 (-) True G811
TU1008 lncRNA upstream 520583 5329572 ~ 5329774 (-) True G844
TU1009 lncRNA upstream 521737 5330726 ~ 5334758 (-) True G845
AMCG00003471 mRNA downstream 17582 4562401 ~ 4565560 (-) True AMCG00003471
AMCG00003472 mRNA downstream 29908 4547613 ~ 4553234 (-) True AMCG00003472
AMCG00003470 mRNA downstream 60144 4521548 ~ 4522998 (-) True AMCG00003470
AMCG00003466 mRNA downstream 178500 4376892 ~ 4404642 (-) True AMCG00003466
AMCG00003462 mRNA downstream 259164 4299905 ~ 4323978 (-) True AMCG00003462
AMCG00003477 mRNA upstream 70831 4879820 ~ 5154595 (-) True AMCG00003477
AMCG00003479 mRNA upstream 381560 5190549 ~ 5225471 (-) True AMCG00003479
AMCG00003484 mRNA upstream 535081 5344070 ~ 5356468 (-) False AMCG00003484
AMCG00003482 mRNA upstream 548597 5357586 ~ 5358050 (-) True AMCG00003482
AMCG00003483 mRNA upstream 552098 5361087 ~ 5373418 (-) True AMCG00003483
TU643 other downstream 1152870 3394657 ~ 3430272 (-) True G531
TU462 other downstream 2144321 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 2181247 2397642 ~ 2401895 (-) False AMCG00003423
TU1027 other upstream 536850 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 6142187 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 6294337 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 7114819 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 7267049 12076038 ~ 12078152 (-) False AMCG00003625

Expression Profile