RNA id: TU920


Basic Information

Item Value
RNA id TU920
length 811
RNA type TUCP
GC content 0.45
exon number 4
gene id AMCG00003476
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4583142 ~ 4808989 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACTAATTCACTTTCTGGAAAGGTATATTGACCAAATTCAGGACAACACATTTGTGCATCTCTTCAGACCAACATATCCAGGAGTCCCTCATTCCTTTGTGACAgggcaaaagaaacaaacagataaaaatGGTGCAGGGAAAGGCAGGGTACAGGTTTCAAAACTGGGCCCAGACCTACAGCTCCTGTCCTGAGAAGTACTTCCAGCCCAGCAGTGTGGAGGATGTCAGACAGATTTTAGCAATGGCCAGGCAGAGCAGCAAACGAGTGAAGGTGGTGGGAGGGGGGCACTCTCCCTCTGACATTGCCTGCACGGATGAATTCATGATCAGCTTGGACAAGATGAACAGGGTTCTTGAGGTAAAAATACCTTTGAAGACTAGTGGATGGATCCAACCAAATTCAATAACTAAATGAGTGTTTTCTCAAGATGAAAGGGTTTACTTGAATCATAATATGATATTATTAAGCCGTCAATTGAGCTGTCTCCACAGACCTTGTCTGGTTGGCTGACTGACTAGTATTAGAATATGATTGATGGCTACTTGGCTGGTTAATCAGCTAATCATACACATGGGGGACACCTCCAGTCTAATATAAAGTCAAAGCCTGGGAGGGTATCttcatttatgtttgtgttttggtttgagTGTTTTTGTTCATCATTATCTCATCTCCCTGGATAAGGTcatcttttaagaaataaataagcataaatAAAATTCAGTGTATGCTCCCCTGGCCTTTGTTCCCATTTGTTAATAGTGTGCTTGTTTGACTTTCTTTGTGTTCCCTAAAGGCCCAGTGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU915 lncRNA downstream 103473 4545898 ~ 4547298 (-) True G762
TU896 lncRNA downstream 129754 4520815 ~ 4521017 (-) True G748
TU891 lncRNA downstream 164745 4485607 ~ 4486026 (-) True G744
TU890 lncRNA downstream 165206 4483516 ~ 4485565 (-) True G743
TU851 lncRNA downstream 323921 4282149 ~ 4326850 (-) True G708
TU933 lncRNA upstream 118479 4779846 ~ 4783376 (-) True G777
TU944 lncRNA upstream 320652 4982019 ~ 4982220 (-) True G786
TU962 lncRNA upstream 470100 5131467 ~ 5131701 (-) True G804
TU969 lncRNA upstream 471333 5132700 ~ 5140245 (-) True G811
TU1008 lncRNA upstream 668205 5329572 ~ 5329774 (-) True G844
AMCG00003471 mRNA downstream 85211 4562401 ~ 4565560 (-) True AMCG00003471
AMCG00003472 mRNA downstream 97537 4547613 ~ 4553234 (-) True AMCG00003472
AMCG00003470 mRNA downstream 127773 4521548 ~ 4522998 (-) True AMCG00003470
AMCG00003466 mRNA downstream 246129 4376892 ~ 4404642 (-) True AMCG00003466
AMCG00003462 mRNA downstream 326793 4299905 ~ 4323978 (-) True AMCG00003462
AMCG00003477 mRNA upstream 218453 4879820 ~ 5154595 (-) True AMCG00003477
AMCG00003479 mRNA upstream 529182 5190549 ~ 5225471 (-) True AMCG00003479
AMCG00003484 mRNA upstream 682703 5344070 ~ 5356468 (-) False AMCG00003484
AMCG00003482 mRNA upstream 696219 5357586 ~ 5358050 (-) True AMCG00003482
AMCG00003483 mRNA upstream 699720 5361087 ~ 5373418 (-) True AMCG00003483
TU643 other downstream 1220499 3394657 ~ 3430272 (-) True G531
TU462 other downstream 2211950 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 2248876 2397642 ~ 2401895 (-) False AMCG00003423
TU1027 other upstream 684472 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 6289809 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 6441959 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 7262441 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 7414671 12076038 ~ 12078152 (-) False AMCG00003625

Expression Profile