RNA id: AMCG00003477


Basic Information

Item Value
RNA id AMCG00003477
length 1932
RNA type mRNA
GC content 0.54
exon number 21
gene id AMCG00003477
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4879820 ~ 5154595 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtattccatTCTATGCTTCAGACAAATCATCCTAGACGTGTCTCAAAGCACCGTTGCAGTGATGTCGGCGAGAAAAGCGGTGGTCTTCGATGTGGGGGGCGTCCTGCTGACCCCCGCGGTGCCGGTGCTGTTTCGGCAGTATGAGGAGTCCGTGGGGCTGCCCAGGGATTTCCTCCAGAAGACCATTCTCAGTGGGGGTCCAGAGAACGTGTTTGTCCAAGCTGAGAAAGGACAGCTGACTCTCACCCAGATGGTTTCACAGTTTGAGGCGGAGTGCCATAAGAGTGCCAGAAATGAGGGATTCTCTCTGCCAGCTCAGTTCTCCATCCAGAAGCTCTTTAAGCAGCTCAGTGCTGCGTTGaaagtcaatcagcccatgttGGACGCAGCAGTGAAGCTCCGAGATCATGGGTTTGCCACTTGTGTGCTGACCAACAACTGGGTGGATGACTCGGCTCAGCGAGAGCGAACGGCGCAGATATTGTCCACTCTCAGCGGACACTTTGATCTGATTGTGGAATCCTGCCGTGTGCGCATGAGGAAACCTGAGGCCTCCATCTACTCCTACACCCTGGACAACCTGAAGACCAAACCCCAGGAGACCATCTTTCTGGATGACATAGGAGCCAACCTGAAGGTTGCTCGCGACATGGGCATGGCCACCATTCGGGTCAGGGACACCCACGAGGCTCTGATGGAGCTGCAGACTCTTTCGGGAGTGGAGATCCCGGCCCTGGCAGAGGCAGGATTCAGGGTTCTGGCTTTGGACATGAAGGGTTATGGGGAATCGACAGCGCCCCCTGaCATAGAGGAGTACTGTCAGGAACAGATTTGCAAGgATTTGGTGACCTTCATGGATAAAATGGGCATTCCCCAGGTTACCTTGGTTGGCCATGACTGGGGTGGTGTAATTGTGTGGAATATGGCACGGTGCTATCCCGAGAGAGTCCGAGCTGTGGTGTCACTGAACACCCCCCTACTCCCGGCCAAGCCTGATGTCAACCCTttagaacaaattaaatctcTACCCATCTTTGACTACCAGCTTTACTTCCAAGAACCTGGTGTGGCTGAAGCAGAATTGGAGAAGAACCTGGAGAGAACCTTCAAACTGTTGTTTATAGCGAATAGAGACGAGGATGCTGTCTGgcctaataaaacagtacaggATAGTAGAATCCGGCCTGACCAGCTGCAAGAGCTCTGGCTGGTGGAGAAGCACCGGCTTGAGATAACCAGGCTGCTCGGCCATGCTACAGGCAGGGGCATGGCAGTGCTGGTTGCGTCCGGCCAGCAGCTTTGGCTTTCACAGGCCAAGCTGTCGGAAGCCAACAAATTGGCTCTCCTGGATGCGCCCGTCACACCTGGTCACACGTTTGGTCCTGCTGTGGATGACCTTCTACTCAGATCCAAGGAGGCGAGCGGGTCCTCGAAGGCTTTTGCCGATGCTTACGCAGACAGTGGAGTGGAAGCAaggattataaatGTCCAGGTTCCAGCTCTGATGGTGACTGCAGCAAATGACCACGTGCTTTTGCCAGCCTTTACCAATGGCATGGAAAATTTGATTGAAGACCTAACAAGAGCACAGGTTGAGGACTGTGGACACTGGACTCAGGTGGATAGGCCTGCTGAGCTCAATAAGATCCTCATCCCTTGGCTGAAGGACAATAGTGACCTGCTGCCAATCCCTGCCGTGGTTCAGGGCTTCACATTAGGCAAGCAGATTGGGGAGCATGGAACACAGGACTCCTCTGTTCGGCAATCTCCACCTGTGGTCCCTCACAGGCTGGCAGGACAACCCCTCTACATCCACACATGGACTGAAGACCTCAGatGGAGGCTCAATCTCCTCCCCACTAAATGGAAACAAGCCCTCACTCGCTCTTTCCTCATCATGAGCGGAGCCGTGATCAAATGTGGGGACTGA

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0060841 venous blood vessel development biological_process
GO:0004301 epoxide hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU933 lncRNA downstream 96444 4779846 ~ 4783376 (-) True G777
TU915 lncRNA downstream 332522 4545898 ~ 4547298 (-) True G762
TU896 lncRNA downstream 358803 4520815 ~ 4521017 (-) True G748
TU891 lncRNA downstream 393794 4485607 ~ 4486026 (-) True G744
TU890 lncRNA downstream 394255 4483516 ~ 4485565 (-) True G743
TU1008 lncRNA upstream 174977 5329572 ~ 5329774 (-) True G844
TU1009 lncRNA upstream 176131 5330726 ~ 5334758 (-) True G845
TU1029 lncRNA upstream 185866 5340461 ~ 5341987 (-) True G862
TU1122 lncRNA upstream 597482 5752077 ~ 5755468 (-) True G942
TU1126 lncRNA upstream 633473 5788068 ~ 5788321 (-) True G946
AMCG00003476 mRNA downstream 70831 4583142 ~ 4808989 (-) True AMCG00003476
AMCG00003471 mRNA downstream 314260 4562401 ~ 4565560 (-) True AMCG00003471
AMCG00003472 mRNA downstream 326586 4547613 ~ 4553234 (-) True AMCG00003472
AMCG00003470 mRNA downstream 356822 4521548 ~ 4522998 (-) True AMCG00003470
AMCG00003466 mRNA downstream 475178 4376892 ~ 4404642 (-) True AMCG00003466
AMCG00003479 mRNA upstream 35954 5190549 ~ 5225471 (-) True AMCG00003479
AMCG00003484 mRNA upstream 189475 5344070 ~ 5356468 (-) False AMCG00003484
AMCG00003482 mRNA upstream 202991 5357586 ~ 5358050 (-) True AMCG00003482
AMCG00003483 mRNA upstream 206492 5361087 ~ 5373418 (-) True AMCG00003483
AMCG00003486 mRNA upstream 254203 5408798 ~ 5413661 (-) True AMCG00003486
TU920 other downstream 218453 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 1449548 3394657 ~ 3430272 (-) True G531
TU462 other downstream 2440999 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 2477925 2397642 ~ 2401895 (-) False AMCG00003423
TU1027 other upstream 191244 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 5796581 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 5948731 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 6769213 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 6921443 12076038 ~ 12078152 (-) False AMCG00003625

Expression Profile