RNA id: AMCG00003480


Basic Information

Item Value
RNA id AMCG00003480
length 7638
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00003480
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5303450 ~ 5334752 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGCCGTCACACAGCGCTCTGACTCAGGCCTGCGAGGGGCAGCGCTCAGTGCGGATCGACCAGAGGAACTGATGAGCTGGCGTTTCAATCTGCCCCACCAGCCTGAGCGACGCAGTGGATGGACAGCCGGACCGAGGGTTAGCGAGCCGCTCGAGGATCCAGGGAAGATGAGGAGTCTGATCAGACGGCCCCAGCTCTGCGCACTCGACGAGGTGAAGTGTTTGACATACCAAGACAACGGCCCTTCCCCTCCAGTGCCAACCTTAGGGACTGAGATTGAGGAGAATGCCCTTCCAATTTATTACCAGACGAGGGCATGGAATGAGAGACGCTGTGTCCCAGACAAGACTGGGCATCAGGCCCCAGCCAGTGAAACAGTGAGGACCCCCCCAGGACTCGCCCAGGGCCTGTGATGACCCTGCTTCACACAAAGTGGGGGACAAATTCTAGCCGATGAgaacctgttttgttttgtttaggttttttctTCAAATCTGTAACTTTTAGGCATTCAAGGGAATTTTAAAGGCAggcatctttttttcttcagttgttttATGTCATTGCATCACCGATACCTGCTGAAGATGTGAAAGTTCTGAAAAAGCAGGTGAAATCCAGCACTTCAGTTGAAAGGAAGAAGCACTTTTCAGTTCCACGCCATCACAGGGTTCAGAGTGACACTCAGGGATACTCAGGGCTAAAGCAACctttgtactttatttattaaaacaaaaagaaactaaTTCACTTTTATAGACAATTTACTATGGGGGACCAGCCTGTCTACAAGACCAACCACATTGTGAATTGCACTGACAGCAGGTATTTCCAGCAGCAGCAAAACTCCTTGTCTGCAATGAACCACAGCTACAGCACGCCTGGCATGGAGTCACTGCAGTCCCCGGTCTCACCCCATTTTGACTCCCAGGACGGCTCCGCGGTGAAGCCTTTTCCAGGGATGGTGGAGGTTTCCAAAGCTGCCGGTTCATGGCCAGGGCCTGTCAGCAACCACAGGAACAGCATGGGCAACGCCGGCGTAATGTGGAGCTCCCCCACGCAGGGAGAGGCTCCGGACGTGGCCGACAGCAGCAACAGTGGCGGGGGCTACCAGTACAGCATGACAGGGCAGAGCAACGCCAACGGGCAGCCCAAAATCACCAGCAGCGTCTTACAGAAGCTGGACTCCTTTACCCAGGTCTTTTCCAACCAGAACCTGCGCATCCACCAGGGCAATGGCATCGCCAACAGCCTGGCTCAGCACCTGCAAGTGGGCCTCCCCCCTTCTCTGCCCGTCACCGCCACAGACAGTGCCCTCTGCCAACTCCTTTCCCATAAACCCCCAGGGCACGAAGCACAGCAGGTGGCcatacagcagcagcaacaacaacccCAGCAGAGGTACCAACTGGAGCAGCAGATGCAGATGCAGCCCAAACAGCAGCATGTCCAAGAGCTGCATCAACACCaccagcaacagcagcagcagctgtatTATGagttccagcagcagcagcagcagcagcagcagcagcagctccagcagcaaCAGAGAGCGGCCCAACTGCAGCACCTGCACCAGGCCctgcagcaccagcagcagatGCAAAGCCTACAGTCCCAGCAGCAGCtcatacagcagcagcagcaaagtCAGTACTACTTACAGCAGCAGCCTCCAGCACAAGCACAGCTCCCTGCCCAGGCGCTGGTCCTGCAGCAGctacagcaacagcagcagcagcagcagcaacagcagcagcgcAGTGTGTACTACCCCCAGCAAGCCCACGCCGCCATGCATCAGGGGCAGCAGCCCATGCAGCCTCCAGCCAGCCTGCCTCACTACAGTCAGAACCGGAAAGccgtgcagcagcagcagcagcagcagccgccacCAGCACAGCCCCCATACTCGCCCGTGGAGCCGGCCCACCCCTCCATGCAGCACCTCCAGCTCCCCGCGGGGCAGCAGTATTACTACCAGGAGCCGCAGGAGCCATACAGACAGTTGTACCAGCACAGTGTGCACTTGCAGCAGCCGGCCCAGGTCCAGGCCCGGGATGAGCTGGGCCTCCAGTCGCCGGGCAAGCAGTACCTCCCTGAGCCCGGCTGTCACCTGCTCGATCCCCACACCCAGGACCTGGGGGAGCTGGTGTCTGGAGTCCAGGGTGTCCCCAAGAAGAGAGAAGATGGCCTGGCCTGTCCAGAACCTTCTCCTACACTGCCCATGGCATGCGGCCCGCTCCagcagggtcagaggtcagtcCGAGAGGCCATGCCAACCATCCAGCTGGTGAGCAGCAAAGGAGGGGTCCAGCGGCAGCACCTCTCTCCCAGCCCCCATTGGACACAGGTGTCTTTACCAAACGTCAAGGCAGACCGTTCTTCTCCAGATCACATCAGCGCTCTGCTAGAGAGAGAAGACATGAAGAACAGACTGTTGTGCTCCATGTGTCAGAAGGAATTCAAAAGTCTGCCGGCGCTCAACGGACACATGCGCTCTCATGGGGGTATGAGGGCTCTGCCAGTACCCAAACAGGAAGAAGGGGACACACAGCTGCCCAAAGAGGTGGAGCCCCTGCTTCCCATCGTCATGCCTGTGTCTGTGCCTGTAAAGCTCTCTCCTGCTCGCTGCCGCGCCCCTGGCTCCGAGGCGGCCCCCCGTGCCCTGCAGACCGGCGACCCTTCCAAGCCCATGCAGCAGCAGCGGCGgccgcagcagcagcatttGCCCCTCGGCTCTGGAGCGGCCCACCCTAGTGCCGTCCCCTCTGACTCCGTCCGCCAGGCCCAGAAGTCGGAGAAGCCGGTGCGGGGGGGGCAGCAGGACAAGAAGAAGTACCGCCACCGACCGGAACCGCTCATCATCCCGTCGCCCTGCCCGGGCCTGACCGGTGGGGGTGCCACTCTGTTCCAGAGCCAGCTGCGCTCCCCGCGGGTCCTGGGGGAGCCCCCACCCTACACCCCGCCCCCCATGCTGAGTCCGGTGCGCCTGGGCTCGGGCCTCTTCAGCAGCGTGAGCAGCAGCCTCTTCCATGCCGGCATGCCCCTCACGCCTGCGACTCCGCGCATGCTGCTCTGCAGGACCAGCAGTGTGGACGGCGGCGCAGTGGCGGTGACACCAGGGCCAGGAGAGCAGGCCATGGATGTGGAGCCACGTATCAACATCGGCGCGCGGTTCCAGGCGGTGGTTCCGGAGCTGCGGAGATATTCCCGGGTGGAGAAAGACGTTCACAAGGCCAGCATGGTCTGGACCCCCTGGGCAGAGCTGGACACCCCCGAGACTCAGCAGAAAGTGAACCACCTGGTGAACATGGCCTGCTCCAGCGTCCTGCCGGGCGGGGGTACCAACGCCGAGTTCGCTCTGCACTGTCTGTTCGAGTGCAAAGGCAACTTCATGgctacACTGGAGAAGCTGCTAATTCTGAAGCCCTCAAGACCAAAATCCCATCCTCTTGCTGATTACCACTATGCTGGATCTGATAAGTGGACAGTCCTGGAGAAGAAGCAGCTAAATAAAGCCCTGGCTGTATACAACAAGGACTTCTTTCTCGTCCAGAAAATGGTGAAGACTAAAACAGTGGCACAGTGCGTTGAGTACTATTACACCTGGAAGAAGAGGCTGCGTCTTGGCAAGCAACCCCGGCCTCGCCTTGCTAACCAGGAGAGTGAAGACATGGCCAGTGGAGAGGAGGTGGGGCTGGAATCGGACGAGCTGGAGGAGGACAGAAAGTCCATCAAGGAAGAGGAGCCTCCAGGCCCCAGGTCTCCCGATCAGGAGCTCCCGCTGTGCGTCGAGGCAGCAGACCACATCTCGGCTCTATCCAATGCCTCTTTTGTGTGTGAGGTCCCCAACTGTGGGTCTATTTTCAACTCCAAGCAGGCTCTGAATGGTCACGCTCGCATCCACAGCAACACCAGCCAGGCCCAGCGGCCCATTCCCGGCAGCAAACCCAAAGCAGCATCACAGTCGGGCCACGGCTCGGTCAAGAACTCCCCCGCTCACAGCACCACCAGCGGAGACACGGACCCCACCGTCATCTTCCCCTGTAAAGAGTGCGGAAAGGTGTTCTTCAAAATCAAGAGCCGCAACGCCCACATGAAGACGCACCGGCAGCAGGAAGACCCCGAGCGCAGGAGGACGCAGCGGGCGCCGGAGAGCGTGGAGCTGCACGCGGCCTACCGCGCCCCTCCACCCGTGCCCATCGCGCCCCTGCCGCTACCCTTTGACCACATGGGTATGGTGAAGCGGGTAAagactgaggaggaggaggaggaggaagaggacacCCTGATGAACGCGCACTTGCTGCTGGTGCGGGAGCCGGGCGAGTACCTGGCGGGGGAGGAGCTGTGATGGAACTGGCCTCCCCAGGGGAGAGGGGTTGAGCTGCGCCCCCGCACCAAAGACCATCTATGAAATGAATACACTTTTGATCAAGCCCTGGAGAGATGGCTGGACAGGggccttttcttcttctctatCCCTGTTGAGATGCCCAGGTGTATTTCTCCAAGtttctctttattgtttttttaaagcttttgacCATGTTTTTCTGAATGCAGGGGATGAAGGGATGATAACACTTATTATTCTTCAGCGGTTGACAACATCCCTCAGATACTCTAGTCTATCCAACACTGTAACAAAGACTTGGAAAATGTCCGGGCTGCCAAAGGTTACTGCAGTAGAAAACTGATCTCAGTGTCCTGCATAGAGGAGCTGCAGATCTACAGATGCGTCTTTTCTcaggtgtgtgtttttaaacccCCTTAGTAATGTGAGATGTGAGAGAAATGTTCTGCTGGCTGGGGGGCTCTTATTCCAGGCCATGGCCTTCAATTCTAAACTTTCATTCAATCTGGAAAAATGGCAAATCAAAATAGAGCGATTATTGTCGTATTGATACTGAAATCAGTACAGCAGGGTAATTGCAGCCATGTTGATGTCAAGGAACGTCCTCTCCAAGAGGACAGCTTGACATTTCAGTGGGTTGACACCCTGTTGCGAGTGGGTGCAGAGGTTTCCAGATGTTTTCTCAGTGCGCAGGGCCTGTCTTATCTCAGGTATCACACTCAGGTGTAGCTTTAGAAACAAACATGATCACAACTCTTCTTAGTCTATAAAAACCCAAAGGCTCTTGATGGTTTTCTTGATGGTTGCATCACAgtataagaaaaacacagacaagcTCGGTTAGGCTCAAAGAACTCAAAGGATTCggaccatttatttttttctggacacTTAAGATGACTGTTAATTCTTGTTAATTGACCATTTTCCTTACATTTATCTGCGGTCAGCTATAAACTTCTGATGATAAATGGATGAAAACAGTGGAAATCAGAACCACCGATGTTCTTAACCAACAGGCTTCTCTGACAGGCAGGTGAATGTGGGGCCATTTCCATATCACAATGGTCCCAAAAGGCAGGTACTGCTCATCTTGAACCAAACATCGCTGGGGGTCTGACACAGACGTGCTGTCCTCAGAGGCGGGCTTGAGAAACTGCTGGTCAGTTTCCAGAatagtaaatacatacaattacattcaaattgcCTTTGGAATTAGAAGGCTGTATTTAGCAATGTCAGTGCCAGGGTATACCGCAAGCCAGCGAGCCACAAAATAGTAATTAAGggacaaaacacatatttaaaagtacatatataataaaaagcattatcctctttaaaataaatataaagaaacaggaTTATTCTGAATGAATTGTATACCAAAACCAGAATCTGTAACatattttgaagttttattcataggattttgaaaagattttaatgatttatcaGTTCTTGTTCAAGATACCGTGCAAAAGGAAGAAAGGTTTGAAATGTTAGGTCTTTACATGTTTATGGCTatagtttgtatgtatatatatccttGACATGTTTTCATATTTCGTCACATTTGCTAAGTATTGCATTCTGGGCAAACTGGTGGAAGATTTCAGGACAGCACTTTCAGTCTTTCGGGGACAGTGCAGGAGTGTCACAGCATATCGTGGCTCTCAGGACAGAACCGTTTGCATCTTCATAATTcgttaaaaatgaaatgtgcaaatGGACACAAAAGGTCTCCGGCGGGCAGCCATGAATACACAGAAGATGCCAAGCACAGTCACACTGGGATAACAGTTTACTCATCCTGTGCTCTAAAGTCCACTGCTATTTGTTCTATGTaagttcattattttaaaataaatcaagccACGAGGCAAGTATTTTGCTGCCTTACATCAACTGTAAACTAGTAAAAAGGGAAGTCTAATCCACTATTAACCCTTGACTTACCAGGAGTACATATACTTTGCCTACTGTATGGAAGACAGTTAATAGTAGTTATAATTGAAAATGACACTGAGGATGTATTGATATAGAGCGATTTGAAATGAGGTACCTAACAGCACATATGctgaattgtgtttatatttgcacttaatgtttacattaacccccccccccgtgGAGAAATGACTTTGTGTAGCTAAAGACAGGTTCCACAAATATGTATCGATAACGCCCCCTTCTGTCCTTCCTTCCATCCTTCCATACTAACGGAAATAGGAGAACTGATATTGAGGTGTGCTCGATTCTCAAAACTCCCATCCAAAACAGTGCACAGTAATAGTAGATACTAGTCAATATACAGTGGTGTTAATGTGGCATAACTGGGATATGTGAGTTCTCTGTATTAATTACCAACACTTTCATTTAGTTCAACATTGTCAAATTTCATGTCAGTTGTTCATTTCCCATCGTAAAAGGGAGTATTATTTTGTGAAGAGGCTTAAAGTGAGCCCAATGGACTTCAGATACTGTTGTATTTCATTCTTCttaaatatttctttaaatatatctaattaAGGTTTGGGAGGGCTCGTCTAGCAGCCCCAGGTGACTTTGCTTGATTGTATGATTGGTGGTTCAACAGTTCAGTTGCTGTGGGGATCTGATGTACTTTTATTTAGCAGAAGGTACTACAGCATTACATCATTACATTTAGGACTTGCCTTTACTGAAATATAACTAATAGTGATGTTCGGGTTTTTTCAATTGCCTTGGACCGAAATACATAAGTATttgctgttaaaaaatatgGTGCATGACAAGAGATCAGGTTTGGTCAGGTCTAAAGTGCCATATATTGTCTCAATGCACGTCAAAGTGAAGTTTACAAGTTTTCATTTGATTGTAGTCGAGGCAGCAGATCGATACCAGTCCCAAACAAGATAAAACCAGTTCCTCACAGTATATGACACGGGGAATGAGTTGGCAATTCCAGTACTGTTGGGCCGAGGGGGTTTCTGGGATTGCATTCCACCGCAGGTCTTCATTAATTAAGGGAAGTCTTTATTAGGATAAAAAGTGAAATTGCTCgtttatttcttaaatcagtTGCTAAGTGGAAGGTGCTGTGAATCCTACAAACGCAGGTCCTCAAGGACTGGGATTGCCGAGCCCTGACACAAGTTTCATAGCTGTTCTTGAAGTAAACGCTTCAAATTACAACCACTAATGAATGTCAGTTAAgtttgtcatttaattaatgtcattaagTCTCTTTTGTAACTAACAGAAAATATTTAGcccctgcttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905 lncRNA upstream 749805 4552898 ~ 4553645 (+) True G752
TU893 lncRNA upstream 782817 4515348 ~ 4520633 (+) True AMCG00003469
TU889 lncRNA upstream 819180 4483890 ~ 4484270 (+) True G742
TU878 lncRNA upstream 848308 4452564 ~ 4455142 (+) True AMCG00003473
TU830 lncRNA upstream 923631 4326653 ~ 4379819 (+) True G690
TU1087 lncRNA downstream 216457 5550745 ~ 5556306 (+) True G907
TU1088 lncRNA downstream 223319 5557607 ~ 5558515 (+) True G908
TU1140 lncRNA downstream 495171 5829459 ~ 5829745 (+) True G960
TU1170 lncRNA downstream 621316 5955604 ~ 5955820 (+) True G983
TU1177 lncRNA downstream 651750 5986038 ~ 5986394 (+) True G990
AMCG00003478 mRNA upstream 116177 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003475 mRNA upstream 608113 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003468 mRNA upstream 759689 4541643 ~ 4543761 (+) True AMCG00003468
AMCG00003469 mRNA upstream 781050 4514031 ~ 4522400 (+) False AMCG00003469
AMCG00003474 mRNA upstream 831719 4471337 ~ 4471731 (+) True AMCG00003474
AMCG00003481 mRNA downstream 1203 5335491 ~ 5339847 (+) True AMCG00003481
AMCG00003485 mRNA downstream 44740 5379028 ~ 5402540 (+) True AMCG00003485
AMCG00003487 mRNA downstream 129471 5463759 ~ 5506907 (+) True AMCG00003487
AMCG00003495 mRNA downstream 417855 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003498 mRNA downstream 433070 5767358 ~ 5769937 (+) True AMCG00003498
TU1202 other downstream 1153404 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 3314837 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 3921540 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 4443220 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 6155897 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile