RNA id: AMCG00003482


Basic Information

Item Value
RNA id AMCG00003482
length 465
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00003482
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5357586 ~ 5358050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAACCCGGCCGAAGACCTGCTGGATTTGGATGGCGTTCTGGAAACCATGACTTCAAAGTTACTCGTTGACTGGAACTGGCGGGTAGAAGACCACCCTTTCGAGATGGGCCACGGGCTGTCTCCCCAGAGCATGTCCTCTGGGTCCTCCTTTGAGTCGACGTGCTCCTCGCCGGAGATGATCCAGCGTGTCCCGAACCGTCTGCAACAGCTGGAGTCGTCTGCTTCGTCCGACGGCGCATCTCCGAAATCCGCAAAGCCCAAGATGTCCACCAAGCGCAGGGTGAAGGCCAGCGAGAGGGAGAAGATGCGCATGCGGAGTCTGGCGGACGCGCTGCACCACCTGCGGGATTATCTGCCAGCGGATTACAGCCAGAGAGGACAGCCGCTCACCAAAATCCAAACCCTGAAGTGCACCATTCAGTACATCAATGAGCTCTCCGACCTTCTCAGGAAGACGTGA

Function

GO:

id name namespace
GO:0007525 somatic muscle development biological_process
GO:0042789 mRNA transcription by RNA polymerase II biological_process
GO:0048342 paraxial mesodermal cell differentiation biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0000988 obsolete transcription factor activity, protein binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09077 MSGN1; mesogenin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1029 lncRNA downstream 15599 5340461 ~ 5341987 (-) True G862
TU1009 lncRNA downstream 22828 5330726 ~ 5334758 (-) True G845
TU1008 lncRNA downstream 27812 5329572 ~ 5329774 (-) True G844
TU969 lncRNA downstream 217341 5132700 ~ 5140245 (-) True G811
TU962 lncRNA downstream 225885 5131467 ~ 5131701 (-) True G804
TU1122 lncRNA upstream 394027 5752077 ~ 5755468 (-) True G942
TU1126 lncRNA upstream 430018 5788068 ~ 5788321 (-) True G946
TU1141 lncRNA upstream 471397 5829447 ~ 5829749 (-) True G961
TU1169 lncRNA upstream 597054 5955104 ~ 5955319 (-) True G982
TU1180 lncRNA upstream 628515 5986565 ~ 5986975 (-) True G993
AMCG00003484 mRNA downstream 1118 5344070 ~ 5356468 (-) False AMCG00003484
AMCG00003479 mRNA downstream 132115 5190549 ~ 5225471 (-) True AMCG00003479
AMCG00003477 mRNA downstream 202991 4879820 ~ 5154595 (-) True AMCG00003477
AMCG00003476 mRNA downstream 548597 4583142 ~ 4808989 (-) True AMCG00003476
AMCG00003471 mRNA downstream 792026 4562401 ~ 4565560 (-) True AMCG00003471
AMCG00003483 mRNA upstream 3037 5361087 ~ 5373418 (-) True AMCG00003483
AMCG00003486 mRNA upstream 50748 5408798 ~ 5413661 (-) True AMCG00003486
AMCG00003488 mRNA upstream 195431 5553481 ~ 5555742 (-) True AMCG00003488
AMCG00003489 mRNA upstream 275412 5633462 ~ 5733437 (-) True AMCG00003489
AMCG00003490 mRNA upstream 488848 5846898 ~ 5851181 (-) True AMCG00003490
TU1027 other downstream 1118 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 696219 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 1927314 3394657 ~ 3430272 (-) True G531
TU462 other downstream 2918765 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 2955691 2397642 ~ 2401895 (-) False AMCG00003423
TU2164 other upstream 5593126 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 5745276 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 6565758 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 6717988 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 7676903 13034953 ~ 13035489 (-) True G2236

Expression Profile