RNA id: AMCG00003483


Basic Information

Item Value
RNA id AMCG00003483
length 3378
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00003483
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5361087 ~ 5373418 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgacaGGCAGTCGCAGTGAGGGTGATGCGGGTCAGTGAGTTATGGCCCATCCTGGAGCCCGTGTATTTAAAGAGGGTGCGGATTCAAAGTTGTGTTTCttgatgttttaatgtattgacaGGCAGTGTAGTCTGACAGTGAGGGTGATGGGGGTCAATGAGTTATGGCCCATCCTGGAGCCGGTGCGGGAGTCCGTGCCTCTCTACAGCCTCCGAGGACTGACCTTCGCGGTGGATCTGAGTCTGTGGGTGTGCGAGGCGCAGTTTGTCAAAGAAATGGCTGGGAAAGTCACCAAACCTCATCTCAGgaatttatttttcagagtcTCATCTCTTACACTAATGGGAATAAAGCTGATTTTTGTGATGGAAGGAGAGGCACCAAAACTAAAAGCTGAGACAATGAATAAGAGGAATGAGTTGAGATTTGGACATTCAAAGAAGCCTGTGTCAAAGCCTACAAAAACCGGCAGATCCCACTTCAGATCTGTGCTTAAAGAGTGTGCAGAAATGCTTGACTGTCTTGGCATTCCCTGGGTGACAGCCACAGGAGAAGCTGAAGCCATGTGTGCCTACCTGGACATCAATGGCTTTGTGGATGGATGTATTACTAATGATGGAGATGCCTTTCTTTACGGAGCCCAGACAGTTTACAGAAACTTTAACATGAACAGCAAGGATCCACAGCTAGACTGCTATAAGATGCAAAAAGTGAAATCTAAACTTtatctggagagagagactctCGTGGGTTTAGCAGTTCTGCTTGGTTGTGATTACTTACCGAAGGGCATACCAGGGGTTGGAAAGGAACTGAGTCTAAAGCTTATAGATGCATTAAAAGGAGAAACTCTCCTTGAGAAGTTTAACCAATGGAAAATGCATCTCCcggtatttgaaaataaagagaaGGCAGTTAAAAAAGTCACGCATTGCCTGGTCTGCCATCATCCAGGTTCTGCTAAGACCCACGAGCGCAGTGGCTGCAACCTGTGCAACAGCAGCCATTTCTGTGAGCCACAGGACTACGATTACTCCTGTCCTTGTGACTGGCATCAGGCCGAGCGAGGAAGGCAGGCGAATGCAGTCGAGCTCACCGTTAAAAGGAAAGCCCTGGCATGTGAAGGATTCCCTTTTCCAGAGataatCAAAGAATTTCTAGTATCCAAGGACAAGCCTGTTACAAACATCAAGTGGAGAAAACCAAACCTTTCTTTGATGCAGAAATTTGCTTTTGAAAAGCTGGATTGGCCGAAGCACTATACTAGTGAGaaggtgctggtgctggtgacGTACGCAGAGATAATAAACAGAAAGTCTGGGAGAGACATGACTGCACAGATACAACCAATAAGGGTTTTCAAGCCGAGAGTAAGAAATGGAATTTCGTGCCTTGAAATAATCTGGAAGAAACCAGAGCACTACACATACGCCGAGGATGTCCCTGTCGCGTCTCAGACCACAGTGAGGACCATCGAGGAGGAGTCTCTCTTCCGCTCGGTGTATCCGGAGGTCATTGAGCTCTTTCTAAAGGAAAAGGCCGAGGCGGAGGAGAACAAACAGAAACACAAGAAGAGAAAGCCGAAGGAGCAGAAGACCATGTCTGATGACGTTTCAGACCTCTTCGCTCAGATGAGAATACAGAGCTCCTCCGAAGGGAACTCAGAAACAGCTGCTGGCGCCACTCCTGACAGTCCCACAGTCGCCGCCACAGACGATGCGACGTACCGGCAGCCGCTGGGCTCTCCACTCTCTTCTAAAGTAACTCCTAGTCAacgggagagtgtgtgtgaagaCCACACGAAAGAGAAAAAGGAGGCGGCAGATTGTCCTCCGTCTCCTGTCCCATCTGACGAGCCCAGCCTCACTGCCGCCTCCCCTTTAGAGTCTGTGATCGAGAAGCTGCAGTTGAGCGATATTGACTGGGCAGCCACGTCTTTCGGAGCATCTCCGTCTCCACAGGTGCCACCTGCGCCCCTGTTGGCATTGCAGCACACCGGGGACCTTGCGCCTGTAAAAGGCAGGAGTTATGATAATCCACTGAAGCGTACAGATATTTGCACAGGAGTATCTAAGGACTTCCATTTCCGTAAAATACCGATCAAGCCCACAACGCAGCCCACAGAGAGGTTTTCCAACCCTGGATCTAGCCTTCCTGTGTCAGAGCTTTCCTTCAGAGACCGCGTCCTGATGAAGAACACACAGCAATGTTTCAACACTAATGTGAGTCTCTCAAACCCACTGAAGGATGCGACTCCAGTGGAACACAACAACGCAGCCCCTAAATCACTCAAATTACCTGCTCAACAAATTGGCAAGGCCATCCACACTGAAAAAGAGTCGGCATCTGCATTAGAAACGTTGCTGGCTACAGGTCCGAGGCCCTGCAGTGAGCAGAACACTGGCTTCTCCATTCCAAGACCGAAAACAACTCGTACGAACCACAAGGCCACTGGCGAGAACTTCCACAGAGAGACTTCTACAGTGAAGCCTTCATACAAAACTCAGTCTGTCAAACCTAGCAGTCGAGCTCAGATTCCAAAAGGCGGCAAGAAAAAGGCCATTAAAAAGAGTGTCTGTCAGAGTCTGTCTGCTAGTGAAGACAGCGATGCAGAGAATGTACAGCTTGTAGTAAAAACAACGGTGGGGTTTAAAACTAAAGCTAGTTCTGCATCGTACATTGATGACAAAAAGCCAAACAAGACAATCTCATATTCTGGGTCAGGCAATGCAGTCGTGCGCGATGTACACATCGTGTCACGTATAGCGTCAACAGAAGCGCCTGTCAGCAGGCAGAACCACATCGCAGAGCACGACGTGAGCGCTCGGACCGGGGACAGCGTGTGTGCCCGCCGGGGAGACGCGCCTGCGCGCTGTGCTCTGAGTCCCGGCCCAGGCTCTCCCGCGCCCGACGCTGCAGGAGAGGACTCGCTCATTTCCCTGGACAGCCCGCTGCCTCTGGCGCAGAGGCTGAGACTGAAGTTTGGAAAATAATGGGATTCAAATGTAAAACCCGTCAATAGCTCTAATTACCCTCTTCTGCCCTTTAAATGTGACATTGCTATTTGATACACTGTATGGGAATGTTACAGTTGAACCGATGTGGCCGGTCGCTCTTTACCTCTCTTCAAACAACTGCATTGCATttctgtattgttgttttaattatgattcTTTGATTATTAAGAAATACCATTTCCACTTTCCATCATATTATTCTGATGATGTGCTTATGTTGCCTAAGCCAGTGCATGTgtaattgtgtatgtgtatttgcaatcactcattaaaacattatttcatgtgtggttacttttttttacattcatcaAAACCAAGCGCGAATTTGGTcaaacattttgaatgtttgtatTCGAG

Function

GO: NA

KEGG:

id description
K15338 GEN1, GEN; flap endonuclease GEN

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1029 lncRNA downstream 19100 5340461 ~ 5341987 (-) True G862
TU1009 lncRNA downstream 26329 5330726 ~ 5334758 (-) True G845
TU1008 lncRNA downstream 31313 5329572 ~ 5329774 (-) True G844
TU969 lncRNA downstream 220842 5132700 ~ 5140245 (-) True G811
TU962 lncRNA downstream 229386 5131467 ~ 5131701 (-) True G804
TU1122 lncRNA upstream 378659 5752077 ~ 5755468 (-) True G942
TU1126 lncRNA upstream 414650 5788068 ~ 5788321 (-) True G946
TU1141 lncRNA upstream 456029 5829447 ~ 5829749 (-) True G961
TU1169 lncRNA upstream 581686 5955104 ~ 5955319 (-) True G982
TU1180 lncRNA upstream 613147 5986565 ~ 5986975 (-) True G993
AMCG00003482 mRNA downstream 3037 5357586 ~ 5358050 (-) True AMCG00003482
AMCG00003484 mRNA downstream 4619 5344070 ~ 5356468 (-) False AMCG00003484
AMCG00003479 mRNA downstream 135616 5190549 ~ 5225471 (-) True AMCG00003479
AMCG00003477 mRNA downstream 206492 4879820 ~ 5154595 (-) True AMCG00003477
AMCG00003476 mRNA downstream 552098 4583142 ~ 4808989 (-) True AMCG00003476
AMCG00003486 mRNA upstream 35380 5408798 ~ 5413661 (-) True AMCG00003486
AMCG00003488 mRNA upstream 180063 5553481 ~ 5555742 (-) True AMCG00003488
AMCG00003489 mRNA upstream 260044 5633462 ~ 5733437 (-) True AMCG00003489
AMCG00003490 mRNA upstream 473480 5846898 ~ 5851181 (-) True AMCG00003490
AMCG00003491 mRNA upstream 541229 5914647 ~ 5969984 (-) True AMCG00003491
TU1027 other downstream 4619 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 699720 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 1930815 3394657 ~ 3430272 (-) True G531
TU462 other downstream 2922266 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 2959192 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 5577758 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 5729908 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 6550390 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 6702620 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 7661535 13034953 ~ 13035489 (-) True G2236

Expression Profile