RNA id: AMCG00003485


Basic Information

Item Value
RNA id AMCG00003485
length 4381
RNA type mRNA
GC content 0.48
exon number 27
gene id AMCG00003485
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5379028 ~ 5402540 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCCTCCCGCCTCCCGGAGTCTGCGCAGTGGGCATCGCGCTGTGGGACAGAGCGCGGAATCCAAGCTCCGCGGGATTTGCCCGGGATCGCTGCTGGGGCGTCGAGACGAAGATTGAAAGGACATGTCTAAACGAAAGCACAGCTCCTCAGCCGGGACCTCGCAGAAGCGCGCCCGGCCTGCACAGCCGGAGGAGGCGGACGAGGAATCGGATGAGCCCCGGGACGTGCACCCCGCGCACAACACACACCTGACTTCAGGGGAAGTTGGCATCATCGAAAGCATTTCTTTGAAAAACTTCATGTGCCACGCTCTGTTGGGACCGTTTACTTTTGGGCCAAACGTTAACTTTGTTGTTGGAAATAATGGGAGCGGTAAGAGCGCTGTCCTGACGGCCCTGATTGTTGGCCTTGGTGGAAAAGCCCATGCGACAAACAGAGGGTCCTCTTTGAAGGGATTTGTGAAAGAAGGAGAAAGCTCTGCAGACGTCTCGATCACTTTACGCAACAGAGGGCCAGATGCCTTTAAACCTGAGGTATATGGTGATGGCATCATCGTAGATCAAAGGATTTCCAGCGATGGTGTGAGATCCTACaagttaaaaagcaaaacaggTAATCTTGTGTCGGCGAAGAAGGAGGAGCTCATCGCACTTCTGGATCACTTCAACATCCAGGTCGATAACCCCGTGTCCATTTTAACTCAAGAAATGAGCAAACACTTCTTACAGTCCAAAGGTGAAGGGGACAAATACAAGTTCTTCATGAAGGCCACTCAGCTGGAACAGATGAAGGAAGACTACACTTACATTATGAAAACCAAAACCGTCACACAGAATAATATTGAGAAACATGAAGAGAGTCTAGATGATCTGAAACGTCAGTACTTAGAAAAGGAAGACAAGTTCAAGAGCCTGGCGTCTCTAGATGAGATGCACGACaagctggaggagctgaagcACCAAATGGCCTGGGCTCTGgtaactgaaattgaaaaacaattgcAGCCGATGAGAGAGAGGATTTCGGCTGAAGAAAATGGCACCGTTAAGTTTGATCAGAAAATAGAGGAATGGAAGGGCAAAGTTGTAGAAGCTGAGAGGAAGTACAAAGCTTACTTTGATCAGCTGGAGAGTGTCAGTGAGAGGGTGCAGGTCCTGGAGCCACAGTGCCGATCTCTGAAGGAGGAATCCCAGGCCAAGAGCAATGCCTGCAAAGCTGCCGAGGCTGCTTATCATCGCAATATGACTAATCTGAGGCACTTGGAGAAGGACAAAGAACAGCTGACTAAGCGCATCAATGAGCTCAAGAACAGCGTCAGCCAGTCCACCGAGGCAGACCGGCTGCAGAGACTGGACCGAATCAACCGGCTCCAGCAGGAGCTGCAGGCTTTGAGAGACCAAGACGCCACCCTGAGTCAACAGCAGGACCAGTTCCAGCAGGTCATCGGGAAGTACAGAGAAGAGGTGGCCAAGTTGAGACGTGAAGAGCAAGATCTTCAAAGACAAACTGAAGCCAAGAGGAGGGATCTGAGGGACATGCAGGCCAGTAGAACGGATAAGATTAAAAGGTTTGGGGTGCAGATGCCTGGCCTGCTGGCAGCAATCGATGATGCCCACAGAAAGGGACAGTTCAAAGAGAAGCCCATTGGACCTCTCGGGTTCTGCATCCGGCTGAGAGACCCCATACTTGCCCTGGCCATCGAGAGCTGTCTGAAGGCTCTCATGAACTCCTTCTGCTGTGATAACTATAGGGACGAGAAGATCCTGCAGGCCATCATGTCTCGACACTACAATCAAGGCCGGAGACCCCAGATTATTGTGGGCGAGTTTTCACGCACACTGTACAACATAAGAGACCgagcCGTCAATCACCCAGAATTCCCCACTGTACTCCAGGCCTTGGAAATCGAGGATCCGGTTGTAGCAAACTGTCTCATAGACATGAGAGGCATAGAGACAATTCTGCTCattaaaAACAACAGCATGGCGCGTCGTGTGATGCAGAGTGGGAATCCGCCCAAGAACTGCCGCGAGGCGTTCACTCAGGACGGGGACCAGGTCTACATGAACCGCTACTACTCCTGCGATCAGAAGAGAGCTCTGTACCTGAGTGGGGATGTAGAAGAggaaatcagACAAATCGGTGCAGAAATCGAAAATCAACTTGCGCACATTGCCAAGTTCAATCAGCGAATCCACGCGTTAGAAGATGAAATAAGGAATAATGAAAATCTGCTTCGAAAAACGCATGAAAATAAGAAGAGAGTGAAGGACaatatgagaaaaatacaatttgaaattgGTGATCTGCAAAATGTAGAGGAACCCCAGTCGGAGGACATCAACACACTGGAGGAGGAGTTCCAGGACATCTGTGTAAAGATAAATGCTGCTAAACAGGACAGCGAAAACGCCAAAATAAAGCTCAATCAGCTAAGAAGAGTATTGGAGGAGGCGGAACAGAACTACAGAAGGCATAAGGAAGAAATTAGTAACATAAAAGAAGAGGCAGATCCAATCAAGGATGAACTCGGTAAAGCTGAACAAGAAGTCGAAAGAAGCAAACACCACGCAAAGCACTATGGCGACAAGCGCAAGGCCCACGTCAACACAATCCAGAGGTTAAAGGCAGACCTGGACTCCAAGGAGACGGAGCTGCAGGCGTCCATCGCGCAGGCCACGGAGATCTGTGCGGAGCGTGTGGAGGTGCGGAGGACGGCCAAGAGCCTCGACAGCGAGATGAATCGCCTGCGGCAGAAAATCACTTCCCAGCAAGACCAGCAGGGCGACCGTGATGAGATCATAAGgCAGTACCAGGAGGcagtaaacaaatataaacatattgcaCTGCAAGTGAAAAACCTAAAACGGTTCATCTCTCTGCTTGGCAAGATCATGAATGACCGACACAAGGCCTACACGGAGATGCGCATGTATCTCTCTGTGCGGTGCAAGTACTACTTCGACTCCCTCCTGTCGCAGCGGGGTTACTCTGGGAAAATGTCCTTTGATCATAAGAATGAGACGCTGTCCATCGCGGTCCAGCCGGGAGAGGGGGACAAGGCGGCCCTGAATGACATGCGCTCGCTGTCTGGTGGGGAGCGCTCCTTCTCCACCGTGTGCTTCGTGCTGTCGCTGTGGGCCATCGCAGAGGCGCCCTTCCGCTGCCTGGACGAGTTCGACGTCTATATGGATATGGTCAATCGCAGAATCTCCATGGACATGATGCTGAAGATTGCAGCGAGCCAACGCTACCGCCAGTTCATCTTCCTCACCCCCCAGAGCATGAGTTCTCTTCCAGACAACGGCTTGATGAGGATCCTGCGACTGAACGACCCAGACCGAGGGCAGACAGCGCTGCCGTTTGGCCGGAGGAACCAGGAAGACGAGGAGAAGTGATGAGGCCTCCGAACATCTGAACGCAACCGGAAGCCTGCACTGTGGTTCTGGGGACTGTACAGAGTTAGCAAAGGAAGGAAAAAGGGGGCGTTAGTtctgaaattgtttttaaatattttgattcggagttaaaatgtatgtacagaaaaaaggtgtatataattgtaatcGAAATTGTTATATTACAGAGATCTCTTTCATGTTCTGAAAGAAAGTATTAgaaataaagtatttgttttagctGTTAATATGTGTTGCTTTGCAGACTGTGGGAGACGGTTGGGTGTCCGTACAGGGAGACCTCTGCCCCGGACCGctacagaatacaaaattagGTGTACGCAGTCGGGGTCCCTCAATACGGGGACCGACCAGAAAGAATAGCTTTAATAATCAACCTATAGATTGTTGACTCGCCGCAGAAAGTGttcattgaattattttcttaaacaaattCTCCACATTTGCCTTGTTCAGCATCCTTACAAAATACGTTACACAAAAGCATATAGGTAtagatttattgttttactcctacttgtttgtttgttggtcaTCAGTGCccattgtatttatatacagtacgtTTAAGTATGTTAACAAAACATGTACTTAAAATAGTCTAAATGccatgaaatgtgtgtgtatccaGCTGCTTCTTCagatttcatattaaaaacattttcggGTTAATCTTAAGCTGATAATACCTTAATCCTAAAATGAATGGCAACAGTAAAATGCAAAGTGTTGAACTTAATGCTACTAAATGCAGTGGAAAATAATTTGTCACACATGTAAAACATTCTACATGCATGCCACAAACACTTTATAAAGCAGTTTAATGTTAACATGTTCACATGCTTTGTATTACTCaagtttaaatgcatgcaaGAAGTTAATCACAAATAGGTATAAActattgcataaaaaaaaaaaaaattcagctGAAGCACTGCAAGTCCAATTATGAGTGACAGAC

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22804 SMC6; structural maintenance of chromosomes protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU992 lncRNA upstream 44276 5332509 ~ 5334752 (+) False AMCG00003480
TU905 lncRNA upstream 825383 4552898 ~ 4553645 (+) True G752
TU893 lncRNA upstream 858395 4515348 ~ 4520633 (+) True AMCG00003469
TU889 lncRNA upstream 894758 4483890 ~ 4484270 (+) True G742
TU878 lncRNA upstream 923886 4452564 ~ 4455142 (+) True AMCG00003473
TU1087 lncRNA downstream 148205 5550745 ~ 5556306 (+) True G907
TU1088 lncRNA downstream 155067 5557607 ~ 5558515 (+) True G908
TU1140 lncRNA downstream 426919 5829459 ~ 5829745 (+) True G960
TU1170 lncRNA downstream 553064 5955604 ~ 5955820 (+) True G983
TU1177 lncRNA downstream 583498 5986038 ~ 5986394 (+) True G990
AMCG00003481 mRNA upstream 39181 5335491 ~ 5339847 (+) True AMCG00003481
AMCG00003480 mRNA upstream 44740 5303450 ~ 5334288 (+) True AMCG00003480
AMCG00003478 mRNA upstream 191755 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003475 mRNA upstream 683691 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003468 mRNA upstream 835267 4541643 ~ 4543761 (+) True AMCG00003468
AMCG00003487 mRNA downstream 61219 5463759 ~ 5506907 (+) True AMCG00003487
AMCG00003495 mRNA downstream 349603 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003498 mRNA downstream 364818 5767358 ~ 5769937 (+) True AMCG00003498
AMCG00003497 mRNA downstream 422041 5824581 ~ 5825732 (+) True AMCG00003497
AMCG00003496 mRNA downstream 511931 5914471 ~ 5915592 (+) True AMCG00003496
TU1202 other downstream 1085152 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 3246585 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 3853288 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 4374968 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 6087645 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile